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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05431623.1 ShiD9_010100002497 hypothetical protein 1 500 1
CDS - ZP_05431624.1 ShiD9_010100002502 putative chaperone 512 1864 -1
CDS - ZP_05431625.1 ShiD9_010100002507 3-methyl-adenine DNA glycosylase II 1998 2855 1
CDS - ZP_05431626.1 ShiD9_010100002512 putative sensor protein 2894 6211 -1
CDS - ZP_05431627.1 ShiD9_010100002517 uridine kinase 6529 7170 1
CDS dcd ZP_05431628.1 ShiD9_010100002522 deoxycytidine triphosphate deaminase 7262 7843 1
CDS - ZP_05431629.1 ShiD9_010100002527 putative assembly protein 7865 9718 1
CDS - ZP_05431630.1 ShiD9_010100002532 fused predicted membrane protein, predicted membrane protein 9992 11575 -1
CDS - ZP_05431631.1 ShiD9_010100002537 lipoprotein required for capsular polysaccharide translocation through the outer membrane 12327 13373 1
CDS - ZP_05431632.1 ShiD9_010100002542 tyrosine phosphatase 13379 13822 1
CDS - ZP_05431633.1 ShiD9_010100002547 tyrosine kinase 13825 15987 1
CDS - ZP_05431634.1 ShiD9_010100002552 putative glycosyl transferase 16165 17004 1
CDS - ZP_05431635.1 ShiD9_010100002557 putative colanic acid biosynthesis acetyltransferase WcaB 17007 17495 1
CDS - ZP_05431636.1 ShiD9_010100002562 putative glycosyl transferase 17492 18709 1
CDS wcaD ZP_05431637.1 ShiD9_010100002567 putative colanic acid biosynthesis protein 18684 19901 1
CDS - ZP_05431638.1 ShiD9_010100002572 putative glycosyl transferase 19912 20658 1
CDS - ZP_05431639.1 ShiD9_010100002577 putative colanic acid biosynthesis acetyltransferase WcaF 20674 21222 1
CDS - ZP_05431640.1 ShiD9_010100002582 GDP-D-mannose dehydratase, NAD(P)-binding protein 21248 22369 1
CDS - ZP_05431641.1 ShiD9_010100002587 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase 22372 23340 1
CDS - ZP_05431642.1 ShiD9_010100002592 GDP-mannose mannosyl hydrolase 23340 23819 1
CDS - ZP_05431643.1 ShiD9_010100002597 putative glycosyl transferase 23816 25039 1
CDS - ZP_05431644.1 ShiD9_010100002602 mannose-1-phosphate guanylyltransferase 25042 26478 1
CDS - ZP_05431645.1 ShiD9_010100002607 phosphomannomutase 26672 28042 1
CDS - ZP_05431646.1 ShiD9_010100002612 putative UDP-glucose lipid carrier transferase 28097 29491 1
CDS - ZP_05431647.1 ShiD9_010100002617 colanic acid exporter 29493 30971 1
CDS - ZP_05431648.1 ShiD9_010100002622 putative glycosyl transferase 32429 33649 1
CDS wcaM ZP_05431649.1 ShiD9_010100002627 putative colanic acid biosynthesis protein 33660 35054 1
CDS - ZP_05431650.1 ShiD9_010100002632 UTP--glucose-1-phosphate uridylyltransferase subunit GalF 35229 36122 1
CDS - ZP_05431651.1 ShiD9_010100002637 dTDP-glucose 4,6 dehydratase 36495 37580 1
CDS - ZP_05431652.1 ShiD9_010100002642 dTDP-4-dehydrorhamnose reductase 37580 38479 1
CDS - ZP_05431653.1 ShiD9_010100002647 glucose-1-phosphate thymidylyltransferase 38537 39415 1
CDS - ZP_05431654.1 ShiD9_010100002652 putative dTDP-4-dehydrorhamnose 3,5-epimerase 39420 39977 1
CDS - ZP_05431655.1 ShiD9_010100002667 hypothetical protein 41279 41722 1
CDS - ZP_05431656.1 ShiD9_010100002672 glycosyl transferase family 2 42417 43385 1
CDS - ZP_05431657.1 ShiD9_010100002677 putative LPS biosynthesis related glycosyltransferase 43382 44068 1
CDS - ZP_05431658.1 ShiD9_010100002682 hypothetical protein 44168 45274 1
CDS - ZP_05431659.1 ShiD9_010100002687 putative polysaccharide biosynthesis protein 45616 46719 1
CDS - ZP_05431660.1 ShiD9_010100002692 6-phosphogluconate dehydrogenase 46863 48269 1
CDS - ZP_05431661.1 ShiD9_010100002697 UDP-glucose 6-dehydrogenase 48518 49684 1
CDS - ZP_05431662.1 ShiD9_010100002702 regulator of length of O-antigen component of lipopolysaccharide chains 49830 50807 1
CDS - ZP_05431663.1 ShiD9_010100002707 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 50904 51515 -1
CDS - ZP_05431664.1 ShiD9_010100002712 imidazole glycerol phosphate synthase subunit HisF 51509 52285 -1
CDS - ZP_05431665.1 ShiD9_010100002717 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 52267 53004 -1
CDS hisH ZP_05431666.1 ShiD9_010100002722 imidazole glycerol phosphate synthase subunit HisH 53004 53594 -1
CDS - ZP_05431667.1 ShiD9_010100002727 imidazole glycerol-phosphate dehydratase/histidinol phosphatase 53594 54661 -1
CDS - ZP_05431668.1 ShiD9_010100002732 histidinol-phosphate aminotransferase 54661 55731 -1
CDS hisD ZP_05431669.1 ShiD9_010100002737 histidinol dehydrogenase 55728 57032 -1
CDS hisG ZP_05431670.1 ShiD9_010100002742 ATP phosphoribosyltransferase 57038 57937 -1
CDS - ZP_05431671.1 ShiD9_010100002747 antitoxin YefM 58416 58667 1
CDS - ZP_05431672.1 ShiD9_010100002752 toxin of the YoeB-YefM toxin-antitoxin system 58664 58918 1
CDS - ZP_05431673.1 ShiD9_010100002757 putative enzyme of sugar metabolism 59001 59825 1
CDS - ZP_05431674.1 ShiD9_010100002762 putative DNA-binding transcriptional regulator 59871 60800 1
CDS - ZP_05431675.1 ShiD9_010100002767 predicted amino-acid transporter 61067 62425 1
CDS - ZP_05431676.1 ShiD9_010100002772 putative transport protein 62604 62780 1
CDS - ZP_05431677.1 ShiD9_010100002777 hypothetical protein 62918 63661 1
CDS - ZP_05431678.1 ShiD9_010100002782 hypothetical protein 63675 63902 1
CDS sbcB ZP_05431679.1 ShiD9_010100002787 exonuclease I 63945 65372 -1
CDS dacD ZP_05431680.1 ShiD9_010100002792 D-alanyl-D-alanine carboxypeptidase 65581 66747 1
CDS - ZP_05431681.1 ShiD9_010100002797 DNA gyrase inhibitor 66866 67339 1
CDS - ZP_05431682.1 ShiD9_010100002802 conserved inner membrane protein 67537 68595 1
CDS - ZP_05431683.1 ShiD9_010100002807 hypothetical protein 68767 69096 1
CDS - ZP_05431684.1 ShiD9_010100002812 hypothetical protein 69133 69249 -1
CDS - ZP_05431685.1 ShiD9_010100002817 putative Propanediol utilization protein pduV a.k.a. yoeF 69197 69469 -1
CDS cobU ZP_05431686.1 ShiD9_010100002822 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 69965 70510 1
CDS cobS ZP_05431687.1 ShiD9_010100002827 cobalamin synthase 70507 71250 1
CDS cobT ZP_05431688.1 ShiD9_010100002832 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 71262 72341 1
CDS - ZP_05431689.1 ShiD9_010100002837 hypothetical protein 72403 73338 1
tRNA - - ShiD9_010100t03804 tRNA-Asn 73394 73469 -1
CDS - ZP_05431690.1 ShiD9_010100002842 nitrogen assimilation transcriptional regulator 73796 74713 1
CDS cbl ZP_05431691.1 ShiD9_010100002847 transcriptional regulator Cbl 74815 75765 1
tRNA - - ShiD9_010100t03806 tRNA-Asn 75803 75878 -1
CDS - ZP_05431692.1 ShiD9_010100002852 hypothetical protein 75886 77526 1
tRNA - - ShiD9_010100t03808 tRNA-Asn 77627 77702 1
CDS - ZP_05431693.1 ShiD9_010100002857 hypothetical protein 78156 78872 -1
CDS - ZP_05431694.1 ShiD9_010100002862 AMP nucleosidase 79215 80669 -1
CDS - ZP_05431695.1 ShiD9_010100002867 shikimate transporter 80771 82087 -1
CDS - ZP_05431696.1 ShiD9_010100002872 hypothetical protein 82402 83454 1
CDS - ZP_05431697.1 ShiD9_010100002877 adhesin 83716 90576 -1
tRNA - - ShiD9_010100t03810 tRNA-Asn 91106 91181 -1
CDS - ZP_05431698.1 ShiD9_010100002882 hypothetical protein 91282 92079 -1
tRNA - - ShiD9_010100t03812 tRNA-Ser 92173 92262 1
CDS - ZP_05431699.1 ShiD9_010100002887 putative cytochrome 92831 93046 -1
CDS - ZP_05431700.1 ShiD9_010100002892 putative cytochrome 93125 93361 -1
CDS - ZP_05431701.1 ShiD9_010100002897 hypothetical protein 93704 94354 -1
CDS - ZP_05431702.1 ShiD9_010100002902 putative sulfite oxidase subunit YedZ 94611 95246 -1
CDS - ZP_05431703.1 ShiD9_010100002907 putative sulfite oxidase subunit YedY 95247 96251 -1
CDS - ZP_05431704.1 ShiD9_010100002912 hypothetical protein 96360 96773 -1
CDS - ZP_05431705.1 ShiD9_010100002917 transcriptional regulatory protein YedW 96906 97577 1
CDS - ZP_05431706.1 ShiD9_010100002922 sensory kinase in two-component regulatory system with YedW 97577 98935 1
CDS - ZP_05431707.1 ShiD9_010100002927 chaperone protein HchA 99042 99893 -1
CDS - ZP_05431708.1 ShiD9_010100002932 Porin OmpN 100484 101698 -1
CDS - ZP_05431709.1 ShiD9_010100002937 hypothetical protein 102266 102631 1
CDS - ZP_05431710.1 ShiD9_010100002942 hypothetical protein 102671 103366 1
CDS - ZP_05431711.1 ShiD9_010100002947 DNA cytosine methylase 103433 104851 1
CDS - ZP_05431712.1 ShiD9_010100002952 DNA mismatch endonuclease, patch repair protein 104832 105302 1
CDS - ZP_05431713.1 ShiD9_010100002957 hypothetical protein 105291 106211 -1
CDS - ZP_05431714.1 ShiD9_010100002962 hypothetical protein 106384 107301 1
CDS - ZP_05431715.1 ShiD9_010100002967 hypothetical protein 107380 107562 1
CDS - ZP_05431716.1 ShiD9_010100002972 diguanylate cyclase 107751 109427 1
CDS - ZP_05431717.1 ShiD9_010100002977 mannosyl-3-phosphoglycerate phosphatase 109424 110239 -1