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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05432588.1 ShiD9_010100007396 sodium/proline symporter 119 1627 -1
CDS - ZP_05432589.1 ShiD9_010100007401 hypothetical protein 1786 1995 -1
CDS putA ZP_05432590.1 ShiD9_010100007406 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2050 6012 1
CDS - ZP_05432591.1 ShiD9_010100007411 putative DNA-binding transcriptional regulator 6052 6690 -1
CDS - ZP_05432592.1 ShiD9_010100007416 monooxygenase of the alternative pyrimidine degradation pathway 6977 8068 1
CDS - ZP_05432593.1 ShiD9_010100007421 putative isochorismatase family protein, rutB 8068 8760 1
CDS - ZP_05432594.1 ShiD9_010100007426 hypothetical protein 8772 9158 1
CDS - ZP_05432595.1 ShiD9_010100007431 enzyme of the alternative pyrimidine degradation pathway 9166 9966 1
CDS - ZP_05432596.1 ShiD9_010100007436 hypothetical protein 9976 10566 1
CDS - ZP_05432597.1 ShiD9_010100007441 predicted oxidoreductase, flavin:NADH component 10577 11071 1
CDS - ZP_05432598.1 ShiD9_010100007446 putative transport protein 11092 12420 1
CDS - ZP_05432599.1 ShiD9_010100007451 hypothetical protein 12503 12676 -1
CDS - ZP_05432600.1 ShiD9_010100007456 TrpR binding protein WrbA 13049 13645 1
CDS - ZP_05432601.1 ShiD9_010100007461 hypothetical protein 13666 13893 1
CDS - ZP_05432602.1 ShiD9_010100007466 glucose-1-phosphatase/inositol phosphatase 13931 15172 -1
CDS - ZP_05432603.1 ShiD9_010100007471 hypothetical protein 15675 16721 -1
CDS - ZP_05432604.1 ShiD9_010100007476 curved DNA-binding protein CbpA 16982 17902 1
CDS - ZP_05432605.1 ShiD9_010100007481 chaperone-modulator protein CbpM 17902 18207 1
CDS torD ZP_05432606.1 ShiD9_010100007486 chaperone protein TorD 18300 18899 -1
CDS - ZP_05432607.1 ShiD9_010100007491 trimethylamine N-oxide (TMAO) reductase I, catalytic subunit 18896 21442 -1
CDS - ZP_05432608.1 ShiD9_010100007496 trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit 21442 22614 -1
CDS - ZP_05432609.1 ShiD9_010100007501 DNA-binding transcriptional regulator TorR 22744 23436 1
CDS - ZP_05432610.1 ShiD9_010100007506 TMAO reductase system periplasmic protein TorT 23409 24437 -1
CDS - ZP_05432611.1 ShiD9_010100007511 hybrid sensory histidine kinase TorS 24550 27264 1
CDS - ZP_05432612.1 ShiD9_010100007516 predicted 4Fe-4S membrane protein 27336 28409 1
CDS - ZP_05432613.1 ShiD9_010100007521 predicted regulator of phosphatidylethanolamine synthesis 28457 28630 -1
CDS - ZP_05432614.1 ShiD9_010100007526 cold shock gene 28620 28883 -1
CDS - ZP_05432615.1 ShiD9_010100007531 Putative cold-shock protein (fragment) 28825 29085 -1
CDS - ZP_05432616.1 ShiD9_010100007536 cold shock protein CspG 29024 29236 -1
CDS - ZP_05432617.1 ShiD9_010100007541 stress protein, member of the CspA-family 29522 29734 1
CDS - ZP_05432618.1 ShiD9_010100007546 hypothetical protein 30176 30481 1
CDS - ZP_05432619.1 ShiD9_010100007551 putative outer membrane lipoprotein 30588 31232 1
CDS - ZP_05432620.1 ShiD9_010100007556 hypothetical protein 31229 31975 1
CDS - ZP_05432621.1 ShiD9_010100007561 hypothetical protein 31975 34071 1
CDS - ZP_05432622.1 ShiD9_010100007566 polysaccharide export protein 34117 35256 1
CDS etp ZP_05432623.1 ShiD9_010100007571 phosphotyrosine-protein phosphatase 35244 35690 1
CDS - ZP_05432624.1 ShiD9_010100007576 cryptic autophosphorylating protein tyrosine kinase Etk 35710 37890 1
CDS - ZP_05432625.1 ShiD9_010100007581 phosphoanhydride phosphorylase 38005 39333 -1
CDS - ZP_05432626.1 ShiD9_010100007586 hypothetical protein 39383 39475 -1
CDS - ZP_05432627.1 ShiD9_010100007591 cytochrome bd-II oxidase, subunit II 39488 40624 -1
CDS - ZP_05432628.1 ShiD9_010100007596 cytochrome bd-II oxidase, subunit I 40636 42180 -1
CDS - ZP_05432629.1 ShiD9_010100007601 protein involved in nickel incorporation into hydrogenase-1 proteins 42314 43171 -1
CDS - ZP_05432630.1 ShiD9_010100007606 hydrogenase-1 operon protein HyaE 43168 43566 -1
CDS - ZP_05432631.1 ShiD9_010100007611 hydrogenase 1 maturation protease 43563 44150 -1
CDS - ZP_05432632.1 ShiD9_010100007616 hydrogenase 1 b-type cytochrome subunit 44147 44854 -1
CDS - ZP_05432633.1 ShiD9_010100007621 hypothetical protein 44822 44929 1
CDS - ZP_05432634.1 ShiD9_010100007626 hydrogenase 1 large subunit 44873 46666 -1
CDS - ZP_05432635.1 ShiD9_010100007631 hydrogenase-1 small subunit 46663 47781 -1
tRNA - - ShiD9_010100t07858 tRNA-Ser 48208 48295 1
CDS - ZP_05432636.1 ShiD9_010100007636 hypothetical protein 48502 49161 1
CDS - ZP_05432637.1 ShiD9_010100007641 sulfur transfer protein TusE 49252 49581 1
CDS - ZP_05432638.1 ShiD9_010100007646 acylphosphatase 49578 49856 -1
CDS - ZP_05432639.1 ShiD9_010100007651 predicted methyltransferase 49951 51141 1
CDS - ZP_05432640.1 ShiD9_010100007656 heat shock protein HspQ 51199 51516 1
CDS - ZP_05432641.1 ShiD9_010100007661 hypothetical protein 51561 51974 -1
CDS - ZP_05432642.1 ShiD9_010100007666 hypothetical protein 52147 52809 1
CDS mgsA ZP_05432643.1 ShiD9_010100007671 methylglyoxal synthase 52905 53363 1
CDS helD ZP_05432644.1 ShiD9_010100007676 DNA helicase IV 53395 55449 -1
CDS - ZP_05432645.1 ShiD9_010100007681 hypothetical protein 55572 56018 1
CDS - ZP_05432646.1 ShiD9_010100007686 YccS 56028 58190 1
CDS - ZP_05432647.1 ShiD9_010100007691 hypothetical protein 58153 58782 -1
CDS - ZP_05432648.1 ShiD9_010100007696 SOS cell division inhibitor 59001 59510 1
CDS - ZP_05432649.1 ShiD9_010100007701 outer membrane protein A 59810 60919 1
CDS - ZP_05432650.1 ShiD9_010100007706 hypothetical protein 60994 61446 -1
CDS - ZP_05432651.1 ShiD9_010100007711 predicted peptidase 61632 63392 1
CDS - ZP_05432652.1 ShiD9_010100007716 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 63353 63979 1
CDS - ZP_05432653.1 ShiD9_010100007721 ribosome modulation factor 64049 64216 -1
CDS - ZP_05432654.1 ShiD9_010100007726 hypothetical protein 64472 65035 -1
CDS - ZP_05432655.1 ShiD9_010100007731 paraquat-inducible protein B 65032 66672 -1
CDS - ZP_05432656.1 ShiD9_010100007736 paraquat-inducible membrane protein A 66677 67930 -1
CDS - ZP_05432657.1 ShiD9_010100007741 ABC transporter ATPase component 68060 69967 -1
CDS rlmL ZP_05432658.1 ShiD9_010100007746 23S rRNA m(2)G2445 methyltransferase 69978 72086 -1
CDS - ZP_05432659.1 ShiD9_010100007751 putative 2Fe-2S cluster-containing protein 72330 73439 1
CDS - ZP_05432660.1 ShiD9_010100007756 hypothetical protein 73436 73978 -1
CDS - ZP_05432661.1 ShiD9_010100007761 dihydroorotate dehydrogenase 2 74152 75162 -1
CDS - ZP_05432662.1 ShiD9_010100007766 putativi pili assembly chaperone 75273 75962 -1
CDS - ZP_05432663.1 ShiD9_010100007771 predicted fimbrial-like adhesin protein 75976 76491 -1
CDS - ZP_05432664.1 ShiD9_010100007776 putative fimbrial-like protein 76499 77041 -1
CDS - ZP_05432665.1 ShiD9_010100007781 putative fimbrial-like adhesin protein 77053 78123 -1
CDS - ZP_05432666.1 ShiD9_010100007786 putative outer membrane export usher protein 78114 80714 -1
CDS - ZP_05432667.1 ShiD9_010100007791 putative periplasmic pilin chaperone 80739 81440 -1
CDS - ZP_05432668.1 ShiD9_010100007796 putative fimbrial-like adhesin protein 81523 82065 -1
CDS - ZP_05432669.1 ShiD9_010100007801 NAD(P)H-dependent FMN reductase 82421 82996 1
CDS - ZP_05432670.1 ShiD9_010100007806 alkanesulfonate transporter substrate-binding subunit 82989 83948 1
CDS - ZP_05432671.1 ShiD9_010100007811 alkanesulfonate monooxygenase 83945 85090 1
CDS ssuC ZP_05432672.1 ShiD9_010100007816 alkanesulfonate transporter permease subunit 85101 85892 1
CDS ssuB ZP_05432673.1 ShiD9_010100007821 aliphatic sulfonates transport ATP-binding subunit 85889 86656 1
CDS pepN ZP_05432674.1 ShiD9_010100007826 aminopeptidase N 86863 89475 -1
CDS - ZP_05432675.1 ShiD9_010100007831 nicotinate phosphoribosyltransferase 89741 90943 1
CDS asnC ZP_05432676.1 ShiD9_010100007836 asparaginyl-tRNA synthetase 91112 92512 1
CDS - ZP_05432677.1 ShiD9_010100007841 outer membrane protein F 93114 94202 1
CDS - ZP_05432678.1 ShiD9_010100007846 hypothetical protein 94199 94387 -1
CDS - ZP_05432679.1 ShiD9_010100007851 aromatic amino acid aminotransferase 94386 95576 1