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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS tldD ZP_05432707.1 ShiD9_010100007993 protease TldD 77 1522 1
CDS - ZP_05432708.1 ShiD9_010100007998 putative DNA-binding transcriptional regulator 1650 2561 -1
CDS - ZP_05432709.1 ShiD9_010100008003 hypothetical protein 2662 2763 -1
CDS - ZP_05432710.1 ShiD9_010100008008 hypothetical protein 2762 2965 1
CDS - ZP_05432711.1 ShiD9_010100008013 p-hydroxybenzoic acid efflux subunit AaeA 2973 3905 1
CDS - ZP_05432712.1 ShiD9_010100008018 p-hydroxybenzoic acid efflux subunit AaeB 3911 5878 1
CDS - ZP_05432713.1 ShiD9_010100008023 predicted barnase inhibitor 5970 6242 1
CDS - ZP_05432714.1 ShiD9_010100008028 hypothetical protein 6298 6561 -1
CDS - ZP_05432715.1 ShiD9_010100008033 arginine repressor 6926 7396 -1
CDS - ZP_05432716.1 ShiD9_010100008038 malate dehydrogenase 7831 8769 1
CDS - ZP_05432717.1 ShiD9_010100008043 serine endoprotease 8831 9898 -1
CDS - ZP_05432718.1 ShiD9_010100008048 serine endoprotease 9988 11355 -1
CDS - ZP_05432719.1 ShiD9_010100008053 cytochrome d ubiquinol oxidase subunit III 11509 11907 -1
CDS - ZP_05432720.1 ShiD9_010100008058 hypothetical protein 12101 13228 1
CDS rplM ZP_05432721.1 ShiD9_010100008063 50S ribosomal protein L13 13447 13875 1
CDS rpsI ZP_05432722.1 ShiD9_010100008068 30S ribosomal protein S9 13891 14283 1
CDS sspA ZP_05432723.1 ShiD9_010100008073 stringent starvation protein A 14678 15316 1
CDS - ZP_05432724.1 ShiD9_010100008078 ClpXP protease specificity-enhancing factor 15322 15819 1
CDS - ZP_05432725.1 ShiD9_010100008083 putative cryptic C4-dicarboxylate transporter DcuD 15862 17229 -1
CDS - ZP_05432726.1 ShiD9_010100008088 transcriptional regulator NanR 17618 18400 1
CDS - ZP_05432727.1 ShiD9_010100008093 N-acetylneuraminate lyase 18522 19415 1
CDS - ZP_05432728.1 ShiD9_010100008098 putative sialic acid transporter 19525 21015 1
CDS - ZP_05432729.1 ShiD9_010100008103 N-acetylmannosamine-6-phosphate 2-epimerase 21063 21752 1
CDS - ZP_05432730.1 ShiD9_010100008108 N-acetylmannosamine kinase 21749 22624 1
CDS - ZP_05432731.1 ShiD9_010100008113 hypothetical protein 22621 23085 1
CDS - ZP_05432732.1 ShiD9_010100008118 hypothetical protein 23145 24272 -1
CDS gltD ZP_05432733.1 ShiD9_010100008123 glutamate synthase subunit beta 24456 25874 -1
CDS gltB ZP_05432734.1 ShiD9_010100008128 glutamate synthase subunit alpha 25887 30347 -1
CDS - ZP_05432735.1 ShiD9_010100008133 hypothetical protein 31022 31951 1
CDS - ZP_05432736.1 ShiD9_010100008138 aerobic respiration control sensor protein ArcB 32047 34383 1
CDS - ZP_05432737.1 ShiD9_010100008143 isoprenoid biosynthesis protein with amidotransferase-like domain 34613 35266 1
CDS mtgA ZP_05432738.1 ShiD9_010100008148 monofunctional biosynthetic peptidoglycan transglycosylase 35263 35991 1
CDS - ZP_05432739.1 ShiD9_010100008153 hypothetical protein 35988 36620 -1
CDS - ZP_05432740.1 ShiD9_010100008158 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 36834 37106 -1
CDS - ZP_05432741.1 ShiD9_010100008163 hypothetical protein 37103 37957 -1
CDS - ZP_05432742.1 ShiD9_010100008168 PTS IIA-like nitrogen-regulatory protein PtsN 38003 38494 -1
CDS - ZP_05432743.1 ShiD9_010100008173 putative sigma(54) modulation protein 38612 38899 -1
CDS - ZP_05432744.1 ShiD9_010100008178 RNA polymerase factor sigma-54 38922 40355 -1
CDS - ZP_05432745.1 ShiD9_010100008183 putative ABC transporter ATP-binding protein YhbG 40403 41128 -1
CDS - ZP_05432746.1 ShiD9_010100008188 lipopolysaccharide transport periplasmic protein LptA 41135 41692 -1
CDS - ZP_05432747.1 ShiD9_010100008193 hypothetical protein 41661 42236 -1
CDS - ZP_05432748.1 ShiD9_010100008198 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 42233 42799 -1
CDS - ZP_05432749.1 ShiD9_010100008203 D-arabinose 5-phosphate isomerase 42820 43806 -1
CDS - ZP_05432750.1 ShiD9_010100008208 putative calcium/sodium:proton antiporter 43820 44797 -1
CDS - ZP_05432751.1 ShiD9_010100008213 putative ABC transporter ATP-binding protein YrbF 45007 45816 1
CDS - ZP_05432752.1 ShiD9_010100008218 predicted toluene transporter subunit: membrane component of ABC superfamily protein 45824 46606 1
CDS - ZP_05432753.1 ShiD9_010100008223 predicted ABC-type organic solvent transporter 46611 47162 1
CDS - ZP_05432754.1 ShiD9_010100008228 predicted ABC-type organic solvent transporter 47181 47816 1
CDS - ZP_05432755.1 ShiD9_010100008233 hypothetical protein 47720 48109 1
CDS - ZP_05432756.1 ShiD9_010100008238 BolA family protein 48254 48523 1
CDS - ZP_05432757.1 ShiD9_010100008243 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 48578 49837 1
CDS - ZP_05432758.1 ShiD9_010100008248 DNA-binding transcriptional regulator Nlp 49885 50163 -1
CDS - ZP_05432759.1 ShiD9_010100008253 octaprenyl diphosphate synthase 50391 51362 -1
CDS rplU ZP_05432760.1 ShiD9_010100008258 50S ribosomal protein L21 51621 51932 1
CDS rpmA ZP_05432761.1 ShiD9_010100008263 50S ribosomal protein L27 51953 52210 1
CDS - ZP_05432762.1 ShiD9_010100008268 conserved inner membrane protein 52337 53302 1
CDS obgE ZP_05432763.1 ShiD9_010100008273 GTPase ObgE 53318 54490 1
CDS - ZP_05432764.1 ShiD9_010100008278 D-alanyl-D-alanine carboxypeptidase/endopeptidase 54530 55963 -1
CDS greA ZP_05432765.1 ShiD9_010100008283 transcription elongation factor GreA 56211 56687 1
CDS - ZP_05432766.1 ShiD9_010100008288 RNA-binding protein YhbY 56843 57136 -1
CDS rrmJ ZP_05432767.1 ShiD9_010100008293 23S rRNA methyltransferase J 57262 57891 1
CDS hflB ZP_05432768.1 ShiD9_010100008298 ATP-dependent metalloprotease 57991 59925 1
CDS folP ZP_05432769.1 ShiD9_010100008303 dihydropteroate synthase 60015 60863 1
CDS glmM ZP_05432770.1 ShiD9_010100008308 phosphoglucosamine mutase 60856 62193 1
CDS - ZP_05432771.1 ShiD9_010100008313 hypothetical protein 62107 62250 -1
CDS secG ZP_05432772.1 ShiD9_010100008318 preprotein translocase subunit SecG 62421 62753 1
tRNA - - ShiD9_010100t08770 tRNA-Leu 62768 62854 1
CDS - ZP_05432773.1 ShiD9_010100008323 predicted hydrolase, inner membrane 63313 64938 1
CDS - ZP_05432774.1 ShiD9_010100008328 argininosuccinate synthase 64946 66289 -1
tRNA - - ShiD9_010100t08772 tRNA-Met 66637 66713 1
CDS - ZP_05432775.1 ShiD9_010100008333 hypothetical protein 66920 67372 1
CDS nusA ZP_05432776.1 ShiD9_010100008338 transcription elongation factor NusA 67400 68887 1
CDS infB ZP_05432777.1 ShiD9_010100008343 translation initiation factor IF-2 68912 71584 1
CDS rbfA ZP_05432778.1 ShiD9_010100008348 ribosome-binding factor A 71748 72149 1
CDS truB ZP_05432779.1 ShiD9_010100008353 tRNA pseudouridine synthase B 72149 73093 1
CDS rpsO ZP_05432780.1 ShiD9_010100008358 30S ribosomal protein S15 73242 73511 1
CDS - ZP_05432781.1 ShiD9_010100008363 polynucleotide phosphorylase/polyadenylase 73758 75893 1
CDS - ZP_05432782.1 ShiD9_010100008368 lipoprotein NlpI 76002 76886 1
CDS - ZP_05432783.1 ShiD9_010100008373 ATP-dependent RNA helicase DeaD 77066 78955 1
CDS - ZP_05432784.1 ShiD9_010100008378 tryptophan permease 79109 80353 1
CDS - ZP_05432785.1 ShiD9_010100008383 hypothetical protein 80471 81478 -1
CDS - ZP_05432786.1 ShiD9_010100008388 hypothetical protein 81684 82562 -1
CDS - ZP_05432787.1 ShiD9_010100008393 predicted peptidase (collagenase-like) protein 82571 83566 -1
CDS - ZP_05432788.1 ShiD9_010100008398 hypothetical protein 83775 84299 1
CDS - ZP_05432789.1 ShiD9_010100008403 predicted acyltransferase with acyl-CoA N-acyltransferase domain 84293 84796 1
CDS - ZP_05432790.1 ShiD9_010100008408 GIY-YIG nuclease superfamily protein 84783 85085 -1
CDS - ZP_05432791.1 ShiD9_010100008413 hypothetical protein 85136 85579 1
CDS - ZP_05432792.1 ShiD9_010100008418 predicted intracellular protease 85559 86077 -1
CDS - ZP_05432793.1 ShiD9_010100008423 putative nucleoside-diphosphate-sugar epimerase 86205 86840 1
CDS - ZP_05432794.1 ShiD9_010100008428 predicted permease 86913 87953 1
CDS - ZP_05432795.1 ShiD9_010100008433 hypothetical protein 88067 88642 -1
CDS - ZP_05432796.1 ShiD9_010100008438 DnaA initiator-associating protein DiaA 88652 89242 -1
CDS - ZP_05432797.1 ShiD9_010100008443 hypothetical protein 89262 89657 -1
CDS - ZP_05432798.1 ShiD9_010100008448 putative glycosylase 89615 91651 -1
CDS - ZP_05432799.1 ShiD9_010100008453 hypothetical protein 91715 92575 1
CDS - ZP_05432800.1 ShiD9_010100008458 putative fimbrial protein 92618 93709 -1
CDS - ZP_05432801.1 ShiD9_010100008463 putative fimbrial usher protein 93720 95480 -1
CDS - ZP_05432802.1 ShiD9_010100008468 predicted outer membrane protein 95489 96235 -1
CDS - ZP_05432803.1 ShiD9_010100008473 periplasmic pilin chaperone (lpfB-like) protein 96265 96960 -1
CDS - ZP_05432804.1 ShiD9_010100008478 putative fimbrial-like adhesin protein 97040 97624 -1