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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05433274.1 ShiD9_010100010882 L-fuculokinase 1 1317 -1
CDS fucI ZP_05433275.1 ShiD9_010100010887 L-fucose isomerase 1426 3201 -1
CDS - ZP_05433276.1 ShiD9_010100010892 L-fucose transporter 3234 4550 -1
CDS - ZP_05433277.1 ShiD9_010100010897 L-fuculose phosphate aldolase 5097 5744 1
CDS - ZP_05433278.1 ShiD9_010100010902 L-1,2-propanediol oxidoreductase 5772 6920 1
CDS xni ZP_05433279.1 ShiD9_010100010907 exonuclease IX 6975 7730 -1
CDS - ZP_05433280.1 ShiD9_010100010912 L-serine deaminase II 7842 9209 -1
CDS - ZP_05433281.1 ShiD9_010100010917 predicted serine transporter 9267 10556 -1
CDS - ZP_05433282.1 ShiD9_010100010922 hypothetical protein 11113 12477 -1
CDS queF ZP_05433283.1 ShiD9_010100010927 7-cyano-7-deazaguanine reductase 12589 13437 -1
CDS - ZP_05433284.1 ShiD9_010100010932 SecY interacting protein Syd 13505 14050 1
CDS - ZP_05433285.1 ShiD9_010100010937 hypothetical protein 14300 14425 1
CDS - ZP_05433286.1 ShiD9_010100010942 hypothetical protein 14672 15001 1
CDS - ZP_05433287.1 ShiD9_010100010947 tRNA pseudouridine synthase C 15001 15783 1
CDS - ZP_05433288.1 ShiD9_010100010952 flavodoxin 15801 16250 1
CDS - ZP_05433289.1 ShiD9_010100010957 predicted D-glucarate transporter 16685 18037 1
CDS - ZP_05433290.1 ShiD9_010100010962 putative glucarate dehydratase 18039 19379 1
CDS - ZP_05433291.1 ShiD9_010100010967 (D)-glucarate dehydratase 1 19400 20740 1
CDS - ZP_05433292.1 ShiD9_010100010972 hybrid sensory histidine kinase BarA 20972 23728 -1
CDS rumA ZP_05433293.1 ShiD9_010100010977 23S rRNA 5-methyluridine methyltransferase 23785 25086 1
CDS relA ZP_05433294.1 ShiD9_010100010982 GDP/GTP pyrophosphokinase 25134 27368 1
CDS - ZP_05433295.1 ShiD9_010100010987 antitoxin MazE 27446 27694 1
CDS - ZP_05433296.1 ShiD9_010100010992 toxin ChpA 27694 28029 1
CDS mazG ZP_05433297.1 ShiD9_010100010997 nucleoside triphosphate pyrophosphohydrolase 28100 28891 1
CDS pyrG ZP_05433298.1 ShiD9_010100011002 CTP synthetase 29119 30756 1
CDS eno ZP_05433299.1 ShiD9_010100011007 phosphopyruvate hydratase 30844 32142 1
CDS - ZP_05433300.1 ShiD9_010100011012 hypothetical protein 32126 32266 -1
CDS - ZP_05433301.1 ShiD9_010100011017 hypothetical protein 32202 32906 -1
CDS - ZP_05433302.1 ShiD9_010100011022 hypothetical protein 33088 33228 -1
CDS - ZP_05433303.1 ShiD9_010100011027 hypothetical protein 33367 34038 1
CDS - ZP_05433304.1 ShiD9_010100011032 putative kinase 36082 37560 -1
CDS - ZP_05433305.1 ShiD9_010100011037 putative transporter 37587 38864 -1
CDS - ZP_05433306.1 ShiD9_010100011042 putative oxidoreductase 39183 39968 1
CDS - ZP_05433307.1 ShiD9_010100011047 putative FAD containing dehydrogenase 40038 41492 1
CDS - ZP_05433308.1 ShiD9_010100011052 major facilitator superfamily MFS_1 41514 42923 1
CDS - ZP_05433309.1 ShiD9_010100011057 predicted flavoprotein 42901 43680 1
CDS - ZP_05433310.1 ShiD9_010100011062 predicted flavoprotein 43677 44537 1
CDS - ZP_05433311.1 ShiD9_010100011067 predicted anti-terminator regulatory protein 44685 45260 -1
CDS - ZP_05433312.1 ShiD9_010100011072 hypothetical protein 45277 45537 -1
CDS - ZP_05433313.1 ShiD9_010100011077 hypothetical protein 45528 46799 -1
CDS - ZP_05433314.1 ShiD9_010100011082 putative 6-pyruvoyl tetrahydrobiopterin synthase 46877 47239 -1
CDS cysJ ZP_05433315.1 ShiD9_010100011087 sulfite reductase subunit alpha 47558 49357 1
CDS - ZP_05433316.1 ShiD9_010100011092 sulfite reductase subunit beta 49357 51069 1
CDS - ZP_05433317.1 ShiD9_010100011097 phosphoadenosine phosphosulfate reductase 51143 51877 1
CDS - ZP_05433318.1 ShiD9_010100011102 hypothetical protein 52142 52294 1
CDS - ZP_05433319.1 ShiD9_010100011107 hypothetical protein 52488 55187 1
CDS - ZP_05433320.1 ShiD9_010100011112 hypothetical protein 55285 56847 1
CDS - ZP_05433321.1 ShiD9_010100011117 hypothetical protein 56844 57377 1
CDS - ZP_05433322.1 ShiD9_010100011122 hypothetical protein 57392 58447 1
CDS - ZP_05433323.1 ShiD9_010100011127 putative cytoplasmic protein 58458 59204 1
CDS - ZP_05433324.1 ShiD9_010100011132 hypothetical protein 59186 59836 1
CDS - ZP_05433325.1 ShiD9_010100011137 hypothetical protein 59833 60756 1
CDS - ZP_05433326.1 ShiD9_010100011142 hypothetical protein 60753 61046 1
CDS - ZP_05433327.1 ShiD9_010100011147 alkaline phosphatase isozyme conversion aminopeptidase 62351 63388 -1
CDS - ZP_05433328.1 ShiD9_010100011152 sulfate adenylyltransferase subunit 2 63640 64548 1
CDS cysN ZP_05433329.1 ShiD9_010100011157 sulfate adenylyltransferase subunit 1 64550 65977 1
CDS - ZP_05433330.1 ShiD9_010100011162 adenylylsulfate kinase 65977 66582 1
CDS - ZP_05433331.1 ShiD9_010100011167 hypothetical protein 66632 66955 1
CDS ftsB ZP_05433332.1 ShiD9_010100011172 cell division protein FtsB 67149 67460 1
CDS ispD ZP_05433333.1 ShiD9_010100011177 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 67479 68189 1
CDS ispF ZP_05433334.1 ShiD9_010100011182 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 68189 68668 1
CDS truD ZP_05433335.1 ShiD9_010100011187 tRNA pseudouridine synthase D 68665 69714 1
CDS surE ZP_05433336.1 ShiD9_010100011192 stationary phase survival protein SurE 69695 70456 1
CDS pcm ZP_05433337.1 ShiD9_010100011197 protein-L-isoaspartate O-methyltransferase 70450 71076 1
CDS nlpD ZP_05433338.1 ShiD9_010100011202 lipoprotein NlpD 71216 72355 1
CDS - ZP_05433339.1 ShiD9_010100011207 RNA polymerase sigma factor RpoS 72418 73410 1
CDS - ZP_05433340.1 ShiD9_010100011212 Transcriptional regulator hosA 73531 73938 -1
CDS - ZP_05433341.1 ShiD9_010100011217 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase 74085 74678 1
CDS - ZP_05433342.1 ShiD9_010100011222 conserved putative non-oxidative hydroxyarylic acid decarboxylase activity 74678 76105 1
CDS - ZP_05433343.1 ShiD9_010100011227 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase 76116 76352 1
CDS - ZP_05433344.1 ShiD9_010100011232 inner membrane permease YgbN 76391 77755 -1
CDS - ZP_05433345.1 ShiD9_010100011237 hypothetical protein 77844 78620 -1
CDS - ZP_05433346.1 ShiD9_010100011242 putative aldolase 78625 79263 -1
CDS - ZP_05433347.1 ShiD9_010100011247 hypothetical protein 79260 80522 -1
CDS - ZP_05433348.1 ShiD9_010100011252 putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain 80519 81427 -1
CDS - ZP_05433349.1 ShiD9_010100011257 putative DNA-binding transcriptional regulator 81623 82390 1
CDS - ZP_05433350.1 ShiD9_010100011262 serine/threonine-specific protein phosphatase 2 82441 83097 -1
CDS - ZP_05433351.1 ShiD9_010100011267 DNA mismatch repair protein MutS 83203 85764 -1
CDS - ZP_05433352.1 ShiD9_010100011272 hypothetical protein 85840 85974 1
CDS - ZP_05433353.1 ShiD9_010100011277 hypothetical protein 86051 86404 1
CDS - ZP_05433354.1 ShiD9_010100011282 DNA-binding transcriptional activator 86441 88519 -1
CDS - ZP_05433355.1 ShiD9_010100011287 hydrogenase isoenzymes formation protein HypE 88593 89603 -1
CDS - ZP_05433356.1 ShiD9_010100011292 protein required for maturation of hydrogenases 89600 90721 -1
CDS - ZP_05433357.1 ShiD9_010100011297 hydrogenase assembly chaperone 90721 90993 -1
CDS - ZP_05433358.1 ShiD9_010100011302 hydrogenase nickel incorporation protein HypB 90984 91856 -1
CDS hypA ZP_05433359.1 ShiD9_010100011307 hydrogenase nickel incorporation protein 91860 92222 -1
CDS - ZP_05433360.1 ShiD9_010100011312 hypothetical protein 92251 92388 1
CDS - ZP_05433361.1 ShiD9_010100011317 formate hydrogenlyase regulatory protein HycA 92422 92883 1
CDS - ZP_05433362.1 ShiD9_010100011322 hydrogenase 3, Fe-S subunit 93008 93619 1
CDS - ZP_05433363.1 ShiD9_010100011327 formate hydrogenlyase subunit 3 93616 95442 1
CDS - ZP_05433364.1 ShiD9_010100011332 hydrogenase 3, membrane subunit 95445 96368 1
CDS - ZP_05433365.1 ShiD9_010100011337 formate hydrogenlyase, subunit E 96386 98095 1
CDS - ZP_05433366.1 ShiD9_010100011342 formate hydrogenlyase complex iron-sulfur subunit 98105 98647 1
CDS - ZP_05433367.1 ShiD9_010100011347 hydrogenase 3 and formate hydrogenase complex, HycG subunit 98647 99414 1
CDS - ZP_05433368.1 ShiD9_010100011352 protein required for maturation of hydrogenase 3 99411 99821 1
CDS hycI ZP_05433369.1 ShiD9_010100011357 hydrogenase 3 maturation protease 99814 100284 1
CDS - ZP_05433370.1 ShiD9_010100011362 hypothetical protein 100309 101082 1
CDS - ZP_05433371.1 ShiD9_010100011367 putative HTH-type transcriptional regulator ygjM 101153 101572 1