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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05433559.1 ShiD9_010100012315 DNA invertase from prophage CP-933H 67 621 1
CDS - ZP_05433560.1 ShiD9_010100012320 DNA-damage-inducible protein 725 973 -1
CDS - ZP_05433561.1 ShiD9_010100012325 phage integrase family protein 1035 2132 -1
CDS - ZP_05433562.1 ShiD9_010100012330 tRNA-dihydrouridine synthase A 2221 3258 1
CDS pspG ZP_05433563.1 ShiD9_010100012335 phage shock protein G 3392 3634 1
CDS - ZP_05433564.1 ShiD9_010100012340 quinone oxidoreductase, NADPH-dependent 3800 4783 -1
CDS - ZP_05433565.1 ShiD9_010100012345 replicative DNA helicase 4866 6281 1
CDS alr ZP_05433566.1 ShiD9_010100012350 alanine racemase 6334 7413 1
CDS - ZP_05433567.1 ShiD9_010100012355 aromatic amino acid aminotransferase 7666 8859 1
CDS - ZP_05433568.1 ShiD9_010100012360 hypothetical protein 9081 9584 -1
CDS aphA ZP_05433569.1 ShiD9_010100012365 acid phosphatase/phosphotransferase 9986 10699 1
CDS - ZP_05433570.1 ShiD9_010100012370 hypothetical protein 10810 11226 1
CDS - ZP_05433571.1 ShiD9_010100012375 hypothetical protein 11230 11586 1
CDS uvrA ZP_05433572.1 ShiD9_010100012380 excinuclease ABC subunit A 11621 14443 -1
CDS - ZP_05433573.1 ShiD9_010100012385 single-stranded DNA-binding protein 14697 15233 1
CDS - ZP_05433574.1 ShiD9_010100012390 hypothetical protein 15332 15613 -1
CDS - ZP_05433575.1 ShiD9_010100012395 hypothetical protein 16043 17629 1
CDS - ZP_05433576.1 ShiD9_010100012400 DNA-binding transcriptional regulator SoxS 17632 17955 -1
CDS - ZP_05433577.1 ShiD9_010100012405 DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 18041 18505 1
CDS - ZP_05433578.1 ShiD9_010100012410 predicted permease 19051 20400 1
CDS - ZP_05433579.1 ShiD9_010100012415 predicted cation/proton antiporter 20551 22200 1
CDS - ZP_05433580.1 ShiD9_010100012420 hypothetical protein 22354 23646 -1
CDS actP ZP_05433581.1 ShiD9_010100012425 acetate permease 23824 25473 -1
CDS - ZP_05433582.1 ShiD9_010100012430 hypothetical protein 25470 25784 -1
CDS - ZP_05433583.1 ShiD9_010100012435 acetyl-CoA synthetase 25984 27942 -1
CDS nrfA ZP_05433584.1 ShiD9_010100012440 cytochrome c552 28334 29770 1
CDS - ZP_05433585.1 ShiD9_010100012445 cytochrome c nitrite reductase pentaheme subunit 29815 30381 1
CDS - ZP_05433586.1 ShiD9_010100012450 formate-dependent nitrite reductase, 4Fe4S subunit 30378 31049 1
CDS - ZP_05433587.1 ShiD9_010100012455 formate-dependent nitrite reductase, membrane subunit 31046 32002 1
CDS - ZP_05433588.1 ShiD9_010100012460 heme lyase subunit NrfE 32082 33740 1
CDS - ZP_05433589.1 ShiD9_010100012465 formate-dependent nitrite reductase complex subunit NrfF 33733 34116 1
CDS - ZP_05433590.1 ShiD9_010100012470 formate-dependent nitrite reductase complex subunit NrfG 34113 34709 1
CDS gltP ZP_05433591.1 ShiD9_010100012475 glutamate/aspartate:proton symporter 35051 36364 1
CDS - ZP_05433592.1 ShiD9_010100012480 hypothetical protein 36442 37131 -1
CDS - ZP_05433593.1 ShiD9_010100012485 formate dehydrogenase-H, selenopolypeptide subunit 37225 38904 -1
CDS - ZP_05433594.1 ShiD9_010100012490 formate dehydrogenase-H, selenopolypeptide subunit 38953 39372 -1
CDS - ZP_05433595.1 ShiD9_010100012495 putative outer membrane efflux protein MdtP 39570 41036 -1
CDS - ZP_05433596.1 ShiD9_010100012500 multidrug efflux system protein MdtO 41033 43084 -1
CDS - ZP_05433597.1 ShiD9_010100012505 multidrug resistance protein MdtN 43084 44115 -1
CDS - ZP_05433598.1 ShiD9_010100012510 formate dehydrogenase H 44134 44409 -1
CDS - ZP_05433599.1 ShiD9_010100012515 putative alkyl sulfatase 44618 46603 -1
CDS - ZP_05433600.1 ShiD9_010100012520 putative ribose-5-phosphate isomerase B (rpiB-like) protein 46856 47173 1
CDS - ZP_05433601.1 ShiD9_010100012525 hypothetical protein 47242 47571 1
CDS phnP ZP_05433602.1 ShiD9_010100012530 carbon-phosphorus lyase complex accessory protein 47718 48476 -1
CDS - ZP_05433603.1 ShiD9_010100012535 aminoalkylphosphonic acid N-acetyltransferase 48478 48912 -1
CDS - ZP_05433604.1 ShiD9_010100012540 ribose 1,5-bisphosphokinase 48899 49456 -1
CDS - ZP_05433605.1 ShiD9_010100012545 carbon-phosphorus lyase complex subunit 49456 50592 -1
CDS - ZP_05433606.1 ShiD9_010100012550 ATP-binding component of phosphonate transport 50589 51269 -1
CDS phnK ZP_05433607.1 ShiD9_010100012555 phosphonate C-P lyase system protein PhnK 51380 52138 -1
CDS - ZP_05433608.1 ShiD9_010100012560 carbon-phosphorus lyase complex subunit 52135 52980 -1
CDS - ZP_05433609.1 ShiD9_010100012565 carbon-phosphorus lyase complex subunit 52973 54037 -1
CDS phnH ZP_05433610.1 ShiD9_010100012570 carbon-phosphorus lyase complex subunit 54037 54621 -1
CDS - ZP_05433611.1 ShiD9_010100012575 carbon-phosphorus lyase complex subunit 54618 55070 -1
CDS - ZP_05433612.1 ShiD9_010100012580 phosphonate metabolism transcriptional regulator PhnF 55071 55796 -1
CDS - ZP_05433613.1 ShiD9_010100012585 phosphonates transport system, permease protein 55817 56647 -1
CDS - ZP_05433614.1 ShiD9_010100012590 phosphonate/organophosphate ester transporter subunit 56702 57718 -1
CDS - ZP_05433615.1 ShiD9_010100012595 phosphonate/organophosphate ester transporter subunit 57743 58531 -1
CDS - ZP_05433616.1 ShiD9_010100012600 hypothetical protein 58664 59107 -1
CDS - ZP_05433617.1 ShiD9_010100012605 putative alkylphosphonate uptake protein in phosphonate metabolism 59267 59602 -1
CDS - ZP_05433618.1 ShiD9_010100012610 hypothetical protein 60004 62232 1
CDS - ZP_05433619.1 ShiD9_010100012615 hypothetical protein 62229 63107 1
CDS - ZP_05433620.1 ShiD9_010100012620 proline/glycine betaine transporter 63371 64873 1
CDS - ZP_05433621.1 ShiD9_010100012625 sensor protein BasS/PmrB 65050 66150 -1
CDS - ZP_05433622.1 ShiD9_010100012630 DNA-binding transcriptional regulator BasR 66151 66819 -1
CDS - ZP_05433623.1 ShiD9_010100012635 putative cell division protein 66816 68459 -1
CDS - ZP_05433624.1 ShiD9_010100012640 arginine:agmatin antiporter 68563 69900 -1
CDS - ZP_05433625.1 ShiD9_010100012645 DNA-binding transcriptional activator 70037 70798 -1
CDS - ZP_05433626.1 ShiD9_010100012650 biodegradative arginine decarboxylase 71123 73390 -1
CDS - ZP_05433627.1 ShiD9_010100012655 DNA-binding transcriptional regulator MelR 73589 74497 -1
CDS - ZP_05433628.1 ShiD9_010100012660 alpha-galactosidase, NAD(P)-binding protein 74780 76135 1
CDS - ZP_05433629.1 ShiD9_010100012665 melibiose:sodium symporter 76238 77659 1
CDS - ZP_05433630.1 ShiD9_010100012670 hypothetical protein 77798 78427 -1
CDS - ZP_05433631.1 ShiD9_010100012675 anaerobic class I fumarate hydratase (fumarase B) 78550 80196 -1
CDS - ZP_05433632.1 ShiD9_010100012680 anaerobic C4-dicarboxylate transporter 80274 81614 -1
CDS - ZP_05433633.1 ShiD9_010100012685 DNA-binding transcriptional activator DcuR 82185 82904 -1
CDS - ZP_05433634.1 ShiD9_010100012690 sensory histidine kinase DcuS 82901 84532 -1
CDS - ZP_05433635.1 ShiD9_010100012695 hypothetical protein 84713 84943 1
CDS - ZP_05433636.1 ShiD9_010100012700 predicted acyltransferase with acyl-CoA N-acyltransferase domain 84955 85227 1
CDS - ZP_05433637.1 ShiD9_010100012705 hypothetical protein 85314 85529 1
CDS - ZP_05433638.1 ShiD9_010100012710 hypothetical protein 85544 85750 1
CDS - ZP_05433639.1 ShiD9_010100012715 hypothetical protein 85778 85951 1
CDS - ZP_05433640.1 ShiD9_010100012720 lysyl-tRNA synthetase 86070 87587 -1
CDS - ZP_05433641.1 ShiD9_010100012725 putative transporter 87824 89281 -1
CDS - ZP_05433642.1 ShiD9_010100012730 lysine decarboxylase 1 89340 91487 -1
CDS cadB ZP_05433643.1 ShiD9_010100012735 lysine/cadaverine antiporter 91567 92901 -1
CDS - ZP_05433644.1 ShiD9_010100012740 DNA-binding transcriptional activator CadC 93267 94805 -1
tRNA - - ShiD9_010100t12802 tRNA-Phe 95422 95497 -1
CDS - ZP_05433645.1 ShiD9_010100012745 hypothetical protein 95595 95714 1
CDS - ZP_05433646.1 ShiD9_010100012750 putative transcriptional regulator 95604 96179 -1
CDS dipZ ZP_05433647.1 ShiD9_010100012755 thiol:disulfide interchange protein precursor 96216 97913 -1
CDS - ZP_05433648.1 ShiD9_010100012760 divalent-cation tolerance protein CutA 97889 98227 -1
CDS - ZP_05433649.1 ShiD9_010100012765 anaerobic C4-dicarboxylate transporter 98343 99644 -1
CDS aspA ZP_05433650.1 ShiD9_010100012770 aspartate ammonia-lyase 99762 101198 -1
CDS fxsA ZP_05433651.1 ShiD9_010100012775 FxsA 101535 102011 1
CDS - ZP_05433652.1 ShiD9_010100012780 inner membrane protein YjeH 102027 103283 -1
CDS groES ZP_05433653.1 ShiD9_010100012785 co-chaperonin GroES 103559 103852 1
CDS groEL ZP_05433654.1 ShiD9_010100012790 chaperonin GroEL 103896 105542 1
CDS - ZP_05433655.1 ShiD9_010100012795 hypothetical protein 105680 106033 1