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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05433676.1 ShiD9_010100012902 predicted Fe-S electron transport protein 268 1407 -1
CDS - ZP_05433677.1 ShiD9_010100012907 hypothetical protein 1406 2953 1
CDS - ZP_05433678.1 ShiD9_010100012912 putative ATPase 2925 3386 1
CDS - ZP_05433679.1 ShiD9_010100012917 N-acetylmuramoyl-l-alanine amidase II 3405 4742 1
CDS mutL ZP_05433680.1 ShiD9_010100012922 DNA mismatch repair protein 4752 6599 1
CDS miaA ZP_05433681.1 ShiD9_010100012927 tRNA delta(2)-isopentenylpyrophosphate transferase 6592 7542 1
CDS hfq ZP_05433682.1 ShiD9_010100012932 RNA-binding protein Hfq 7628 7936 1
CDS - ZP_05433683.1 ShiD9_010100012937 putative GTPase HflX 8012 9292 1
CDS - ZP_05433684.1 ShiD9_010100012942 FtsH protease regulator HflK 9378 10637 1
CDS - ZP_05433685.1 ShiD9_010100012947 FtsH protease regulator HflC 10640 11644 1
CDS - ZP_05433686.1 ShiD9_010100012952 conserved inner membrane protein 11726 11923 1
CDS - ZP_05433687.1 ShiD9_010100012957 adenylosuccinate synthetase 12027 13325 1
CDS - ZP_05433688.1 ShiD9_010100012962 transcriptional repressor NsrR 13530 13955 1
CDS - ZP_05433689.1 ShiD9_010100012967 exoribonuclease R 13994 16435 1
CDS - ZP_05433690.1 ShiD9_010100012972 23S rRNA (guanosine-2'-O-)-methyltransferase 16615 17346 1
CDS - ZP_05433691.1 ShiD9_010100012977 hypothetical protein 17473 17874 1
CDS - ZP_05433692.1 ShiD9_010100012982 predicted transcriptional regulator effector protein 17893 18591 1
CDS - ZP_05433693.1 ShiD9_010100012987 hypothetical protein 18642 19301 1
CDS - ZP_05433694.1 ShiD9_010100012992 conserved inner membrane protein 19319 19717 1
CDS - ZP_05433695.1 ShiD9_010100012997 hypothetical protein 19727 20365 1
CDS - ZP_05433696.1 ShiD9_010100013002 predicted synthetase/amidase 20368 21531 1
CDS - ZP_05433697.1 ShiD9_010100013007 isovaleryl CoA dehydrogenase 21600 23240 1
CDS - ZP_05433698.1 ShiD9_010100013012 hypothetical protein 23357 23644 -1
CDS - ZP_05433699.1 ShiD9_010100013017 hypothetical protein 23781 24110 -1
CDS - ZP_05433700.1 ShiD9_010100013022 esterase 24292 25041 1
CDS - ZP_05433701.1 ShiD9_010100013027 transcriptional repressor UlaR 25038 25793 -1
CDS - ZP_05433702.1 ShiD9_010100013032 putative L-ascorbate 6-phosphate lactonase 25901 26965 -1
CDS ulaA ZP_05433703.1 ShiD9_010100013037 ascorbate-specific PTS system enzyme IIC 27320 28717 1
CDS - ZP_05433704.1 ShiD9_010100013042 L-ascorbate-specific enzyme IIB component of PTS 28733 29038 1
CDS - ZP_05433705.1 ShiD9_010100013047 L-ascorbate-specific enzyme IIA component of PTS 29048 29512 1
CDS ulaD ZP_05433706.1 ShiD9_010100013052 3-keto-L-gulonate-6-phosphate decarboxylase 29526 30176 1
CDS - ZP_05433707.1 ShiD9_010100013057 L-xylulose 5-phosphate 3-epimerase 30186 31040 1
CDS sgaE ZP_05433708.1 ShiD9_010100013062 L-ribulose-5-phosphate 4-epimerase 31040 31726 1
CDS - ZP_05433709.1 ShiD9_010100013067 hypothetical protein 31855 32130 -1
CDS rpsF ZP_05433710.1 ShiD9_010100013072 30S ribosomal protein S6 32457 32852 1
CDS - ZP_05433711.1 ShiD9_010100013077 primosomal replication protein N 33006 33173 1
CDS rpsR ZP_05433712.1 ShiD9_010100013082 30S ribosomal protein S18 33178 33405 1
CDS rplI ZP_05433713.1 ShiD9_010100013087 50S ribosomal protein L9 33447 33896 1
CDS - ZP_05433714.1 ShiD9_010100013092 putative dicarboxylate-binding periplasmic protein 34008 34979 -1
CDS - ZP_05433715.1 ShiD9_010100013097 putative transport protein 35032 36333 -1
CDS - ZP_05433716.1 ShiD9_010100013102 putative ATP-independent transporter subunit 36376 36876 -1
CDS - ZP_05433717.1 ShiD9_010100013107 putative oxidoreductase 36873 38954 -1
CDS - ZP_05433718.1 ShiD9_010100013112 coenzyme A transferase 38951 40531 -1
CDS - ZP_05433719.1 ShiD9_010100013117 hypothetical protein 40541 41317 -1
CDS - ZP_05433720.1 ShiD9_010100013122 hypothetical protein 41327 42169 -1
CDS - ZP_05433721.1 ShiD9_010100013127 3-ketoacyl-(acyl-carrier-protein) reductase 42179 42970 -1
CDS - ZP_05433722.1 ShiD9_010100013132 hypothetical protein 43180 43818 1
CDS - ZP_05433723.1 ShiD9_010100013137 hypothetical protein 43819 44448 -1
CDS - ZP_05433724.1 ShiD9_010100013142 hypothetical protein 44432 44674 -1
CDS - ZP_05433725.1 ShiD9_010100013147 peptidyl-prolyl cis-trans isomerase 44667 45287 1
CDS - ZP_05433726.1 ShiD9_010100013152 D-alanine/D-serine/glycine permease 45596 47008 1
CDS - ZP_05433727.1 ShiD9_010100013157 iron-sulfur cluster repair di-iron protein 47053 47715 -1
CDS - ZP_05433728.1 ShiD9_010100013162 putative transmembrane subunit 47823 48788 -1
CDS - ZP_05433729.1 ShiD9_010100013167 NAD(P)H:quinone oxidoreductase 48897 49757 -1
CDS - ZP_05433730.1 ShiD9_010100013172 hypothetical protein 49846 50226 1
CDS cpdB ZP_05433731.1 ShiD9_010100013177 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 50355 52298 -1
CDS - ZP_05433732.1 ShiD9_010100013182 adenosine-3'(2'),5'-bisphosphate nucleotidase 52488 53228 1
CDS - ZP_05433733.1 ShiD9_010100013187 putative transcriptional regulator 53218 53775 -1
CDS - ZP_05433734.1 ShiD9_010100013192 hypothetical protein 54100 54306 1
CDS - ZP_05433735.1 ShiD9_010100013197 hypothetical protein 54368 55711 -1
CDS - ZP_05433736.1 ShiD9_010100013202 methionine sulfoxide reductase A 56034 56672 -1
CDS - ZP_05433737.1 ShiD9_010100013207 hypothetical protein 56780 56908 1
CDS - ZP_05433738.1 ShiD9_010100013212 predicted outer membrane protein and surface antigen 56878 58611 1
CDS - ZP_05433739.1 ShiD9_010100013217 hypothetical protein 58608 62387 1
CDS - ZP_05433740.1 ShiD9_010100013222 hypothetical protein 62390 62731 1
CDS - ZP_05433741.1 ShiD9_010100013227 hypothetical protein 62472 62741 -1
CDS - ZP_05433742.1 ShiD9_010100013232 antitoxin ChpS 62943 63194 1
CDS - ZP_05433743.1 ShiD9_010100013237 toxin ChpB 63188 63538 1
CDS - ZP_05433744.1 ShiD9_010100013242 inorganic pyrophosphatase 63618 64148 -1
CDS - ZP_05433745.1 ShiD9_010100013247 predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily protein 64458 65414 1
CDS - ZP_05433746.1 ShiD9_010100013252 putative sugar transporter subunit: ATP-binding component of ABC superfamily protein 65554 67056 1
CDS - ZP_05433747.1 ShiD9_010100013257 putative sugar transporter subunit: membrane component of ABC superfamily protein 67130 68092 1
CDS - ZP_05433748.1 ShiD9_010100013262 inner membrane ABC transporter permease protein YjfF 68079 69074 1
CDS - ZP_05433749.1 ShiD9_010100013267 fructose-1,6-bisphosphatase 69107 70105 -1
CDS - ZP_05433750.1 ShiD9_010100013272 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me so-diaminopimelate ligase 70281 71654 1
CDS - ZP_05433751.1 ShiD9_010100013277 hypothetical protein 71737 72288 -1
CDS - ZP_05433752.1 ShiD9_010100013282 peptidase PmbA 72394 73734 1
CDS - ZP_05433753.1 ShiD9_010100013287 cytochrome b562 73917 74303 1
CDS nrdG ZP_05433754.1 ShiD9_010100013292 anaerobic ribonucleotide reductase-activating protein 74348 74812 -1
CDS - ZP_05433755.1 ShiD9_010100013297 anaerobic ribonucleoside triphosphate reductase 74971 77109 -1
CDS - ZP_05433756.1 ShiD9_010100013302 trehalose-6-phosphate hydrolase 77503 79158 -1
CDS - ZP_05433757.1 ShiD9_010100013307 trehalose(maltose)-specific PTS system components IIBC 79208 80626 -1
CDS treR ZP_05433758.1 ShiD9_010100013312 trehalose repressor 80748 81695 -1
CDS - ZP_05433759.1 ShiD9_010100013317 magnesium-transporting ATPase MgtA 82074 84770 1