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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05433760.1 ShiD9_010100013322 hypothetical protein 59 445 -1
CDS - ZP_05433761.1 ShiD9_010100013327 aspartate carbamoyltransferase regulatory subunit 518 979 -1
CDS pyrB ZP_05433762.1 ShiD9_010100013332 aspartate carbamoyltransferase catalytic subunit 992 1927 -1
CDS - ZP_05433763.1 ShiD9_010100013337 pyrBI operon leader peptide 1931 2122 -1
CDS - ZP_05433764.1 ShiD9_010100013342 putative mRNA endoribonuclease 2346 2741 -1
CDS - ZP_05433765.1 ShiD9_010100013347 oxidoreductase 2872 3585 -1
CDS - ZP_05433766.1 ShiD9_010100013352 putative transcriptional regulator 3656 4249 1
CDS - ZP_05433767.1 ShiD9_010100013357 hypothetical protein 4249 4377 1
CDS - ZP_05433768.1 ShiD9_010100013362 hypothetical protein 4394 4846 1
CDS - ZP_05433769.1 ShiD9_010100013367 hypothetical protein 4969 6528 1
CDS - ZP_05433770.1 ShiD9_010100013372 ornithine carbamoyltransferase subunit I 6629 7633 -1
CDS - ZP_05433771.1 ShiD9_010100013377 hypothetical protein 7795 8211 1
CDS - ZP_05433772.1 ShiD9_010100013382 putative acetyltransferase 8257 8760 -1
CDS - ZP_05433773.1 ShiD9_010100013387 hypothetical protein 8953 10149 1
CDS valS ZP_05433774.1 ShiD9_010100013392 valyl-tRNA synthetase 10205 13060 -1
CDS - ZP_05433775.1 ShiD9_010100013397 DNA polymerase III subunit chi 13060 13542 -1
CDS - ZP_05433776.1 ShiD9_010100013402 leucyl aminopeptidase 13637 15148 -1
CDS - ZP_05433777.1 ShiD9_010100013407 hypothetical protein 15373 15501 -1
CDS - ZP_05433778.1 ShiD9_010100013412 conserved inner membrane protein 15415 16515 1
CDS - ZP_05433779.1 ShiD9_010100013417 conserved inner membrane protein 16515 17597 1
CDS - ZP_05433780.1 ShiD9_010100013422 putative ATPase 17716 19218 -1
CDS - ZP_05433781.1 ShiD9_010100013427 putative oxidoreductase 19348 20367 -1
tRNA - - ShiD9_010100t13859 tRNA-Leu 20563 20647 1
CDS - ZP_05433782.1 ShiD9_010100013437 hypothetical protein 20838 22085 1
CDS - ZP_05433783.1 ShiD9_010100013442 hypothetical protein 22197 23066 1
CDS - ZP_05433784.1 ShiD9_010100013447 hypothetical protein 23313 23738 -1
CDS - ZP_05433785.1 ShiD9_010100013452 phage transcriptional regulator, AlpA 24162 24365 1
CDS - ZP_05433786.1 ShiD9_010100013457 hypothetical protein 24381 24689 1
CDS - ZP_05433787.1 ShiD9_010100013462 Phage integrase 25026 26240 1
CDS - ZP_05433788.1 ShiD9_010100013467 Phage integrase 26237 27778 1
CDS - ZP_05433789.1 ShiD9_010100013472 putative integrase 27775 29772 1
CDS - ZP_05433790.1 ShiD9_010100013477 hypothetical protein 29780 30196 1
CDS - ZP_05433791.1 ShiD9_010100013482 hypothetical protein 30538 30951 1
CDS - ZP_05433792.1 ShiD9_010100013487 hypothetical protein 31340 31630 -1
CDS - ZP_05433793.1 ShiD9_010100013492 hypothetical protein 31642 32232 -1
CDS - ZP_05433794.1 ShiD9_010100013497 Relaxase/mobilization nuclease family protein 32441 33619 -1
CDS - ZP_05433795.1 ShiD9_010100013502 hypothetical protein 33619 34032 -1
CDS - ZP_05433796.1 ShiD9_010100013507 hypothetical protein 34336 37614 1
CDS - ZP_05433797.1 ShiD9_010100013512 hypothetical protein 37665 38336 1
CDS - ZP_05433798.1 ShiD9_010100013517 hypothetical protein 38401 39120 -1
CDS - ZP_05433799.1 ShiD9_010100013522 hypothetical protein 39346 39933 -1
CDS - ZP_05433800.1 ShiD9_010100013527 hypothetical protein 40520 40705 -1
CDS - ZP_05433801.1 ShiD9_010100013532 hypothetical protein 40907 41032 1
CDS - ZP_05433802.1 ShiD9_010100013537 hypothetical protein 41159 42139 -1
CDS - ZP_05433803.1 ShiD9_010100013542 N-acetylneuraminic acid mutarotase 42204 43310 -1
CDS - ZP_05433804.1 ShiD9_010100013547 hypothetical protein 43330 43878 -1
CDS - ZP_05433805.1 ShiD9_010100013552 tyrosine recombinase 45500 46102 1
CDS - ZP_05433806.1 ShiD9_010100013557 tyrosine recombinase 46580 47176 1
CDS - ZP_05433807.1 ShiD9_010100013562 major type 1 subunit fimbrin (pilin) 47657 48205 1
CDS - ZP_05433808.1 ShiD9_010100013567 fimbrial protein involved in type 1 pilus biosynthesis 48312 48809 1
CDS - ZP_05433809.1 ShiD9_010100013572 chaperone, periplasmic 48846 49571 1
CDS - ZP_05433810.1 ShiD9_010100013577 outer membrane usher protein, type 1 fimbrial synthesis 49638 52274 1
CDS - ZP_05433811.1 ShiD9_010100013582 minor component of type 1 fimbriae 52284 52814 1
CDS - ZP_05433812.1 ShiD9_010100013587 P pilus assembly protein, pilin FimA 52827 53330 1
CDS - ZP_05433813.1 ShiD9_010100013592 minor fimbrial subunit, D-mannose specific adhesin 53350 54252 1
CDS - ZP_05433814.1 ShiD9_010100013597 fructuronate transporter 54426 55769 -1
CDS - ZP_05433815.1 ShiD9_010100013602 mannonate dehydratase 56109 57293 1
CDS - ZP_05433816.1 ShiD9_010100013607 D-mannonate oxidoreductase, NAD-binding protein 57374 58834 1
CDS - ZP_05433817.1 ShiD9_010100013612 hypothetical protein 58856 59050 -1
CDS - ZP_05433818.1 ShiD9_010100013617 DNA-binding transcriptional repressor UxuR 59049 59822 1
CDS - ZP_05433819.1 ShiD9_010100013622 hypothetical protein 59963 60793 -1
CDS - ZP_05433820.1 ShiD9_010100013627 hypothetical protein 61046 61147 1
CDS iraD ZP_05433821.1 ShiD9_010100013632 DNA replication/recombination/repair protein 61465 61857 1
CDS - ZP_05433822.1 ShiD9_010100013637 putative DNA-binding transcriptional regulator 61850 62761 -1
CDS - ZP_05433823.1 ShiD9_010100013642 isoaspartyl dipeptidase 62826 63998 -1
CDS - ZP_05433824.1 ShiD9_010100013647 hypothetical protein 64011 64472 -1
CDS - ZP_05433825.1 ShiD9_010100013652 hypothetical protein 64469 65152 -1
CDS - ZP_05433826.1 ShiD9_010100013657 RNA 2'-phosphotransferase-like protein 65402 65956 1
CDS - ZP_05433827.1 ShiD9_010100013662 hypothetical protein 65969 67147 -1
CDS - ZP_05433828.1 ShiD9_010100013667 hypothetical protein 67215 68075 -1
CDS - ZP_05433829.1 ShiD9_010100013672 hypothetical protein 68140 68397 -1
CDS - ZP_05433830.1 ShiD9_010100013677 hypothetical protein 68394 69161 -1
CDS - ZP_05433831.1 ShiD9_010100013682 putative 2-hydroxyglutaryl-CoA dehydratase (hgdB-like) protein 69171 70322 -1
CDS - ZP_05433832.1 ShiD9_010100013687 hypothetical protein 70438 71718 -1
CDS - ZP_05433833.1 ShiD9_010100013692 multidrug efflux system protein 71759 72991 -1
CDS - ZP_05433834.1 ShiD9_010100013697 hypothetical protein 73458 74414 1
CDS - ZP_05433835.1 ShiD9_010100013702 putative regulator 74656 76068 -1
CDS - ZP_05433836.1 ShiD9_010100013707 hypothetical protein 76245 76409 1
CDS - ZP_05433837.1 ShiD9_010100013712 penicillin G acylase 76761 79301 1
CDS - ZP_05433838.1 ShiD9_010100013717 putative GTP-binding protein YjiA 79379 80335 -1
CDS - ZP_05433839.1 ShiD9_010100013722 hypothetical protein 80346 80549 -1
CDS - ZP_05433840.1 ShiD9_010100013727 hypothetical protein 80680 82830 -1
CDS - ZP_05433841.1 ShiD9_010100013732 4-hydroxyphenylacetate 3-monooxygenase, reductase component 83223 83735 -1
CDS - ZP_05433842.1 ShiD9_010100013737 4-hydroxyphenylacetate 3-monooxygenase large component 83753 85315 -1
CDS - ZP_05433843.1 ShiD9_010100013742 HpaA 85566 86456 -1
CDS - ZP_05433844.1 ShiD9_010100013747 putative 4-hydroxyphenylacetate permease hpaX 86466 87842 -1
CDS - ZP_05433845.1 ShiD9_010100013752 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 88017 88805 -1
CDS - ZP_05433846.1 ShiD9_010100013757 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 88816 89619 -1
CDS - ZP_05433847.1 ShiD9_010100013762 5-carboxymethyl-2-hydroxymuconate delta-isomerase 89730 90110 -1
CDS - ZP_05433848.1 ShiD9_010100013767 Homoprotocatechuate dyoxygenase 90120 90971 -1
CDS - ZP_05433849.1 ShiD9_010100013772 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 90973 92439 -1
CDS - ZP_05433850.1 ShiD9_010100013777 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase 92436 93725 -1
CDS - ZP_05433851.1 ShiD9_010100013782 homoprotocatechuate degradative operon repressor 93997 94443 1
CDS - ZP_05433852.1 ShiD9_010100013787 methyl-accepting chemotaxis protein I 94562 96226 1
CDS - ZP_05433853.1 ShiD9_010100013792 putative transport protein 96275 97636 -1
CDS - ZP_05433854.1 ShiD9_010100013797 putative DNA-binding transcriptional regulator 97851 98765 -1
CDS - ZP_05433855.1 ShiD9_010100013802 putative oxidoreductase 98904 99926 1
CDS - ZP_05433856.1 ShiD9_010100013807 phosphoglycerol transferase I 100066 102357 -1
CDS - ZP_05433857.1 ShiD9_010100013812 hypothetical protein 102611 103108 -1
CDS - ZP_05433858.1 ShiD9_010100013817 DNA replication protein DnaC 103154 103891 -1