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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05433952.1 ShiD9_010100014291 2-isopropylmalate synthase 1 551 1
CDS - ZP_05433953.1 ShiD9_010100014296 3-isopropylmalate dehydrogenase 551 1642 1
CDS - ZP_05433954.1 ShiD9_010100014301 isopropylmalate isomerase large subunit 1645 3045 1
CDS leuD ZP_05433955.1 ShiD9_010100014306 isopropylmalate isomerase small subunit 3056 3661 1
CDS - ZP_05433956.1 ShiD9_010100014311 broad specificity sugar efflux system 3710 4888 -1
CDS - ZP_05433957.1 ShiD9_010100014316 hypothetical protein 4990 5121 -1
CDS - ZP_05433958.1 ShiD9_010100014321 transcriptional regulator SgrR 5210 6865 1
CDS tbpA ZP_05433959.1 ShiD9_010100014326 thiamine transporter substrate binding subunit 7029 8012 1
CDS thiP ZP_05433960.1 ShiD9_010100014331 thiamine transporter membrane protein 7988 9598 1
CDS thiQ ZP_05433961.1 ShiD9_010100014336 thiamine transporter ATP-binding subunit 9582 10280 1
CDS - ZP_05433962.1 ShiD9_010100014341 hypothetical protein 10394 11158 -1
CDS - ZP_05433963.1 ShiD9_010100014346 DNA-binding transcriptional regulator AraC 11244 12122 -1
CDS - ZP_05433964.1 ShiD9_010100014351 ribulokinase 12461 14161 1
CDS - ZP_05433965.1 ShiD9_010100014356 L-arabinose isomerase 14172 15674 1
CDS araD ZP_05433966.1 ShiD9_010100014361 L-ribulose-5-phosphate 4-epimerase 15843 16538 1
CDS - ZP_05433967.1 ShiD9_010100014366 DNA polymerase II 16613 18964 1
CDS - ZP_05433968.1 ShiD9_010100014371 ATP-dependent helicase HepA 19129 22035 1
CDS - ZP_05433969.1 ShiD9_010100014376 23S rRNA/tRNA pseudouridine synthase A 22047 22706 1
CDS djlA ZP_05433970.1 ShiD9_010100014381 Dna-J like membrane chaperone protein 22823 23638 -1
CDS - ZP_05433971.1 ShiD9_010100014386 organic solvent tolerance protein 23893 26247 1
CDS - ZP_05433972.1 ShiD9_010100014391 peptidyl-prolyl cis-trans isomerase SurA 26300 27586 1
CDS pdxA ZP_05433973.1 ShiD9_010100014396 4-hydroxythreonine-4-phosphate dehydrogenase 27586 28575 1
CDS ksgA ZP_05433974.1 ShiD9_010100014401 dimethyladenosine transferase 28572 29393 1
CDS apaG ZP_05433975.1 ShiD9_010100014406 ApaG 29396 29773 1
CDS apaH ZP_05433976.1 ShiD9_010100014411 diadenosine tetraphosphatase 29780 30622 1
CDS folA ZP_05433977.1 ShiD9_010100014416 dihydrofolate reductase 30700 31179 -1
CDS - ZP_05433978.1 ShiD9_010100014421 glutathione-regulated potassium-efflux system protein KefC 31371 33233 -1
CDS - ZP_05433979.1 ShiD9_010100014426 glutathione-regulated potassium-efflux system ancillary protein KefF 33226 33756 -1
CDS - ZP_05433980.1 ShiD9_010100014431 predicted transporter 33864 35195 -1
CDS - ZP_05433981.1 ShiD9_010100014436 predicted 4Fe-4S ferredoxin-type protein 35254 35541 -1
CDS - ZP_05433982.1 ShiD9_010100014441 putative oxidoreductase FixC 35538 36824 -1
CDS fixB ZP_05433983.1 ShiD9_010100014446 putative electron transfer flavoprotein FixB 36875 37816 -1
CDS - ZP_05433984.1 ShiD9_010100014451 putative electron transfer flavoprotein FixA 37831 38601 -1
CDS - ZP_05433985.1 ShiD9_010100014456 L-carnitine/gamma-butyrobetaine antiporter 39076 40590 1
CDS - ZP_05433986.1 ShiD9_010100014461 crotonobetainyl-CoA dehydrogenase 40621 41763 1
CDS - ZP_05433987.1 ShiD9_010100014466 crotonobetainyl-CoA:carnitine CoA-transferase 41892 43109 1
CDS caiC ZP_05433988.1 ShiD9_010100014471 putative crotonobetaine/carnitine-CoA ligase 43183 44736 1
CDS - ZP_05433989.1 ShiD9_010100014476 carnitinyl-CoA dehydratase 44845 45630 1
CDS - ZP_05433990.1 ShiD9_010100014481 carnitine operon protein CaiE 45636 46226 1
CDS - ZP_05433991.1 ShiD9_010100014486 DNA-binding transcriptional activator CaiF 46312 46707 -1
CDS carB ZP_05433992.1 ShiD9_010100014491 carbamoyl phosphate synthase large subunit 46968 50189 -1
CDS - ZP_05433993.1 ShiD9_010100014496 carbamoyl phosphate synthase small subunit 50207 51355 -1
CDS - ZP_05433994.1 ShiD9_010100014501 dihydrodipicolinate reductase 51811 52632 -1
CDS - ZP_05433995.1 ShiD9_010100014506 ribonucleoside hydrolase RihC 52799 53713 -1
CDS ispH ZP_05433996.1 ShiD9_010100014511 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 53779 54729 -1
CDS - ZP_05433997.1 ShiD9_010100014516 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 54731 55180 -1
CDS lspA ZP_05433998.1 ShiD9_010100014521 lipoprotein signal peptidase 55305 55799 -1
CDS ileS ZP_05433999.1 ShiD9_010100014526 isoleucyl-tRNA synthetase 55799 58615 -1
CDS - ZP_05434000.1 ShiD9_010100014531 bifunctional riboflavin kinase/FMN adenylyltransferase 58658 59599 -1
CDS rpsT ZP_05434001.1 ShiD9_010100014536 30S ribosomal protein S20 59928 60191 1
CDS - ZP_05434002.1 ShiD9_010100014551 hypothetical protein 62528 63673 1
CDS nhaR ZP_05434003.1 ShiD9_010100014566 transcriptional activator NhaR 64683 65582 -1
CDS nhaA ZP_05434004.1 ShiD9_010100014571 pH-dependent sodium/proton antiporter 65648 66814 -1
CDS - ZP_05434005.1 ShiD9_010100014576 regulatory protein for HokC, overlaps CDS of hokC 67400 67552 1
CDS - ZP_05434006.1 ShiD9_010100014581 chaperone protein DnaJ 67655 68785 -1
CDS dnaK ZP_05434007.1 ShiD9_010100014591 molecular chaperone DnaK 68874 70790 -1
CDS - ZP_05434008.1 ShiD9_010100014596 hypothetical protein 71167 71571 1
CDS - ZP_05434009.1 ShiD9_010100014601 hypothetical protein 71597 72310 1
CDS - ZP_05434010.1 ShiD9_010100014606 hypothetical protein 72459 73025 1
CDS mogA ZP_05434011.1 ShiD9_010100014611 molybdenum cofactor biosynthesis protein 73060 73647 -1
CDS - ZP_05434012.1 ShiD9_010100014616 transaldolase B 73762 74715 -1
CDS - ZP_05434013.1 ShiD9_010100014621 putative amino acid sodium/proton transporter 74994 76424 1
CDS - ZP_05434014.1 ShiD9_010100014626 hypothetical protein 76494 77270 1