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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05434086.1 ShiD9_010100014990 hypothetical protein 102 1031 -1
CDS - ZP_05434087.1 ShiD9_010100014995 hypothetical protein 1158 1556 -1
CDS - ZP_05434088.1 ShiD9_010100015000 anti-sigma-28 factor, FlgM 1599 1877 -1
CDS - ZP_05434089.1 ShiD9_010100015005 flagella basal body P-ring formation protein FlgA 1958 2695 -1
CDS - ZP_05434090.1 ShiD9_010100015010 Lateral flagellar rod protein (FlgB-like) 2768 3112 1
CDS flgC ZP_05434091.1 ShiD9_010100015015 flagellar basal body rod protein FlgC 3115 3546 1
CDS - ZP_05434092.1 ShiD9_010100015020 flagellar hook capping protein 3546 4259 1
CDS - ZP_05434093.1 ShiD9_010100015025 flagellar basal body FlaE domain-containing protein 4344 5546 1
CDS flgF ZP_05434094.1 ShiD9_010100015030 flagellar basal body rod protein FlgF 5546 6283 1
CDS flgG ZP_05434095.1 ShiD9_010100015035 flagellar basal body rod protein FlgG 6462 7247 1
CDS flgH ZP_05434096.1 ShiD9_010100015040 flagellar basal body L-ring protein 7330 7995 1
CDS flgI ZP_05434097.1 ShiD9_010100015045 flagellar basal body P-ring protein 8010 9110 1
CDS - ZP_05434098.1 ShiD9_010100015050 rod binding protein-like protein 9110 9409 1
CDS - ZP_05434099.1 ShiD9_010100015055 flagellar hook-associated protein FlgK 9598 10974 1
CDS - ZP_05434100.1 ShiD9_010100015060 flagellar hook-associated protein 3 10989 11918 1
CDS - ZP_05434101.1 ShiD9_010100015065 hypothetical protein 11935 12912 1
CDS - ZP_05434102.1 ShiD9_010100015070 transcriptional regulator, CadC 12971 13813 -1
CDS - ZP_05434103.1 ShiD9_010100015075 Lateral flagellin (FliC-like) protein 14299 15213 1
CDS - ZP_05434104.1 ShiD9_010100015080 flagellar hook-associated 2 domain-containing protein 15420 16736 1
CDS - ZP_05434105.1 ShiD9_010100015085 flagellar protein FliS 16759 17151 1
CDS - ZP_05434106.1 ShiD9_010100015090 Lateral flagellar chaperone protein (FliT-like) 17156 17467 1
CDS - ZP_05434107.1 ShiD9_010100015095 flagellar hook-length control protein 17464 18525 1
CDS - ZP_05434108.1 ShiD9_010100015100 flagellar basal body-associated protein FliL 18533 19000 1
CDS - ZP_05434109.1 ShiD9_010100015105 flagellar biosynthesis sigma factor 19020 19736 1
CDS - ZP_05434110.1 ShiD9_010100015110 flagellar motor protein MotA 19749 20612 1
CDS - ZP_05434111.1 ShiD9_010100015115 hypothetical protein 20615 21538 1
CDS - ZP_05434112.1 ShiD9_010100015120 DNA polymerase IV 21609 22664 1
CDS - ZP_05434113.1 ShiD9_010100015125 hypothetical protein 22661 23113 1
CDS - ZP_05434114.1 ShiD9_010100015130 hypothetical protein 23359 24498 1
CDS prfH ZP_05434115.1 ShiD9_010100015135 peptide chain release factor-like protein 24495 25109 1
CDS - ZP_05434116.1 ShiD9_010100015140 aminoacyl-histidine dipeptidase (peptidase D) 25166 26623 -1
CDS - ZP_05434117.1 ShiD9_010100015145 xanthine-guanine phosphoribosyltransferase 26884 27342 1
CDS frsA ZP_05434118.1 ShiD9_010100015150 fermentation/respiration switch protein 27434 28678 1
CDS - ZP_05434119.1 ShiD9_010100015155 DNA-binding transcriptional regulator Crl 28736 29137 1
CDS - ZP_05434120.1 ShiD9_010100015160 outer membrane phosphoporin protein E 29176 30231 -1
CDS - ZP_05434121.1 ShiD9_010100015165 gamma-glutamyl kinase 30519 31622 1
CDS proA ZP_05434122.1 ShiD9_010100015170 gamma-glutamyl phosphate reductase 31634 32887 1
tRNA - - ShiD9_010100t16237 tRNA-Thr 33002 33077 1
CDS - ZP_05434123.1 ShiD9_010100015175 putative transcriptional regulator 33204 33614 -1
CDS - ZP_05434124.1 ShiD9_010100015180 hypothetical protein 33593 34549 -1
CDS - ZP_05434125.1 ShiD9_010100015185 putative oxidoreductase with molybdenum-binding domain 34559 36757 -1
CDS - ZP_05434126.1 ShiD9_010100015190 putative oxidoreductase with FAD-binding domain 36754 37710 -1
CDS - ZP_05434127.1 ShiD9_010100015195 putative xanthine dehydrogenase iron-sulfur-binding subunit 37707 38396 -1
CDS - ZP_05434128.1 ShiD9_010100015200 conserved inner membrane protein 38814 39428 1
CDS - ZP_05434129.1 ShiD9_010100015205 predicted ferredoxin 39640 39969 -1
CDS - ZP_05434130.1 ShiD9_010100015210 hypothetical protein 40282 40992 -1
CDS - ZP_05434131.1 ShiD9_010100015215 putative surface or exported protein 40961 42604 -1
CDS - ZP_05434132.1 ShiD9_010100015220 hypothetical protein 42594 45119 -1
CDS - ZP_05434133.1 ShiD9_010100015225 hypothetical protein 45145 45813 -1
CDS - ZP_05434134.1 ShiD9_010100015230 E. coli common pilus (ECP) 45871 46458 -1
CDS - ZP_05434135.1 ShiD9_010100015235 putative transcriptional regulator 46533 47075 -1
CDS - ZP_05434136.1 ShiD9_010100015240 hypothetical protein 47959 48126 1
CDS rpmJ ZP_05434137.1 ShiD9_010100015245 50S ribosomal protein L36 48161 48301 -1
CDS rpmE2 ZP_05434138.1 ShiD9_010100015250 50S ribosomal protein L31 type B 48301 48564 -1
CDS - ZP_05434139.1 ShiD9_010100015255 hypothetical protein 48927 49028 -1
CDS - ZP_05434140.1 ShiD9_010100015260 putative adhesin 50144 54397 1
CDS - ZP_05434141.1 ShiD9_010100015265 Putatve transcriptional regulator ykgA 54518 55375 -1
CDS - ZP_05434142.1 ShiD9_010100015270 hypothetical protein 55966 56559 -1
CDS - ZP_05434143.1 ShiD9_010100015275 hypothetical protein 56571 56807 -1
CDS - ZP_05434144.1 ShiD9_010100015280 pyridine nucleotide-disulfide oxidoreductase 56916 58241 -1
CDS - ZP_05434145.1 ShiD9_010100015285 putative AraC-type DNA-binding transcriptional regulator 58467 59321 1
CDS - ZP_05434146.1 ShiD9_010100015290 putative hydroxyacid oxidoreductase (Fe-S centre) 59848 60567 1
CDS - ZP_05434147.1 ShiD9_010100015295 hypothetical protein 60578 62005 1
CDS - ZP_05434148.1 ShiD9_010100015300 putative transport protein 61998 62693 1
CDS - ZP_05434149.1 ShiD9_010100015305 predicted inner membrane protein 62936 63604 -1
CDS - ZP_05434150.1 ShiD9_010100015310 choline dehydrogenase 63817 65487 -1
CDS - ZP_05434151.1 ShiD9_010100015315 betaine aldehyde dehydrogenase 65501 66964 -1
CDS - ZP_05434152.1 ShiD9_010100015320 transcriptional regulator BetI 66987 67574 -1
CDS - ZP_05434153.1 ShiD9_010100015325 choline transport protein BetT 67703 69736 1
CDS - ZP_05434154.1 ShiD9_010100015330 hypothetical protein 70243 74292 1
CDS - ZP_05434155.1 ShiD9_010100015335 cyclic di-GMP phosphodiesterase 74434 75522 1
CDS - ZP_05434156.1 ShiD9_010100015340 predicted DNA-bindng transcriptional regulator 75564 76496 -1
CDS - ZP_05434157.1 ShiD9_010100015345 hypothetical protein 76588 77085 -1
CDS - ZP_05434158.1 ShiD9_010100015350 predicted transcriptional regulator with ankyrin domain 77343 77948 1
CDS - ZP_05434159.1 ShiD9_010100015355 hypothetical protein 77997 78344 -1
CDS - ZP_05434160.1 ShiD9_010100015360 predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain 78841 80388 1
CDS - ZP_05434161.1 ShiD9_010100015365 hypothetical protein 80388 81806 1
CDS - ZP_05434162.1 ShiD9_010100015370 putative carbamate kinase 81949 82899 1
CDS - ZP_05434163.1 ShiD9_010100015375 deaminase 82909 84291 1
CDS - ZP_05434164.1 ShiD9_010100015380 hypothetical protein 84560 85000 1
CDS - ZP_05434165.1 ShiD9_010100015385 putative periplasmic binding protein, substrate ribose (sugar-binding protein), ABC-type transport system 85254 86237 1
CDS - ZP_05434166.1 ShiD9_010100015390 Putative ATP-binding component of ABC sugar transport system 86286 87770 1
CDS - ZP_05434167.1 ShiD9_010100015395 putative permease component of transport system, probably ribose specific 87763 88734 1
CDS - ZP_05434168.1 ShiD9_010100015400 putative permease component of sugar ABC transport system 88731 89687 1
CDS - ZP_05434169.1 ShiD9_010100015405 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein 89774 90823 1
CDS - ZP_05434170.1 ShiD9_010100015410 hypothetical protein 91066 91881 1
tRNA - - ShiD9_010100t16239 tRNA-OTHER 92224 92304 1
CDS - ZP_05434171.1 ShiD9_010100015420 neutral amino-acid efflux system 92556 93188 -1
CDS - ZP_05434172.1 ShiD9_010100015425 hypothetical protein 93374 93649 1
CDS - ZP_05434173.1 ShiD9_010100015430 DNA-binding transcriptional activator 93747 95333 -1
CDS prpB ZP_05434174.1 ShiD9_010100015435 2-methylisocitrate lyase 95572 96462 1
CDS - ZP_05434175.1 ShiD9_010100015440 methylcitrate synthase 96507 97676 1
CDS prpD ZP_05434176.1 ShiD9_010100015445 2-methylcitrate dehydratase 97710 99161 1
CDS prpE ZP_05434177.1 ShiD9_010100015450 propionyl-CoA synthetase 99201 101087 1
CDS codB ZP_05434178.1 ShiD9_010100015455 cytosine permease 101425 102684 1
CDS - ZP_05434179.1 ShiD9_010100015460 cytosine deaminase 102674 103957 1
CDS - ZP_05434180.1 ShiD9_010100015465 DNA-binding transcriptional regulator CynR 103997 104896 -1
CDS - ZP_05434181.1 ShiD9_010100015470 carbonic anhydrase 105006 105665 1
CDS - ZP_05434182.1 ShiD9_010100015475 cyanate hydratase 105696 106166 1
CDS cynX ZP_05434183.1 ShiD9_010100015480 putative cyanate transporter 106199 107353 1