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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05434385.1 ShiD9_010100016511 hypothetical protein 1 243 -1
CDS - ZP_05434386.1 ShiD9_010100016516 sensor kinase CusS 980 2428 -1
CDS - ZP_05434387.1 ShiD9_010100016521 DNA-binding transcriptional activator CusR 2418 3101 -1
CDS - ZP_05434388.1 ShiD9_010100016526 copper/silver efflux system outer membrane protein CusC 3258 4640 1
CDS - ZP_05434389.1 ShiD9_010100016531 periplasmic copper-binding protein 4664 4996 1
CDS - ZP_05434390.1 ShiD9_010100016536 copper/silver efflux system membrane fusion protein CusB 5012 6235 1
CDS - ZP_05434391.1 ShiD9_010100016541 copper/silver efflux system, membrane component 6247 9390 1
CDS - ZP_05434392.1 ShiD9_010100016546 phenylalanine transporter 9492 10868 1
CDS - ZP_05434393.1 ShiD9_010100016551 putative membrane protein; putative channel 10936 12183 -1
CDS - ZP_05434394.1 ShiD9_010100016556 dihydropteridine reductase 12291 12944 -1
CDS - ZP_05434395.1 ShiD9_010100016561 hypothetical protein 13038 13406 -1
CDS - ZP_05434396.1 ShiD9_010100016566 hypothetical protein 13471 13671 -1
CDS - ZP_05434397.1 ShiD9_010100016571 carboxylate-amine ligase 13785 14903 -1
CDS - ZP_05434398.1 ShiD9_010100016576 regulatory protein MokC for HokC 2 15346 15498 1
CDS - ZP_05434399.1 ShiD9_010100016581 putative small toxic membrane polypeptide, Putative HokE-like protein (partial) 15778 16029 1
CDS - ZP_05434400.1 ShiD9_010100016586 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 16151 16780 -1
CDS - ZP_05434401.1 ShiD9_010100016591 outer membrane receptor FepA 16946 19186 -1
CDS - ZP_05434402.1 ShiD9_010100016596 enterobactin/ferric enterobactin esterase 19429 20631 1
CDS - ZP_05434403.1 ShiD9_010100016601 hypothetical protein 20634 20852 1
CDS entF ZP_05434404.1 ShiD9_010100016606 enterobactin synthase subunit F 20849 24730 1
CDS - ZP_05434405.1 ShiD9_010100016611 ferric enterobactin transport protein FepE 24946 26079 1
CDS - ZP_05434406.1 ShiD9_010100016616 iron-enterobactin transporter ATP-binding protein 26076 26891 -1
CDS - ZP_05434407.1 ShiD9_010100016621 iron-enterobactin transporter permease 26888 27880 -1
CDS - ZP_05434408.1 ShiD9_010100016626 iron-enterobactin transporter membrane protein 27877 28881 -1
CDS - ZP_05434409.1 ShiD9_010100016631 enterobactin exporter EntS 28992 30242 1
CDS - ZP_05434410.1 ShiD9_010100016636 iron-enterobactin transporter periplasmic binding protein 30246 31202 -1
CDS - ZP_05434411.1 ShiD9_010100016641 isochorismate synthase 1 31577 32752 1
CDS entE ZP_05434412.1 ShiD9_010100016646 enterobactin synthase subunit E 32762 34372 1
CDS - ZP_05434413.1 ShiD9_010100016651 2,3-dihydro-2,3-dihydroxybenzoate synthase 34386 35243 1
CDS - ZP_05434414.1 ShiD9_010100016656 2,3-dihydroxybenzoate-2,3-dehydrogenase 35243 35989 1
CDS - ZP_05434415.1 ShiD9_010100016661 hypothetical protein 35992 36405 1
CDS - ZP_05434416.1 ShiD9_010100016666 carbon starvation protein 36586 38691 1
CDS - ZP_05434417.1 ShiD9_010100016671 hypothetical protein 38874 39071 1
CDS - ZP_05434418.1 ShiD9_010100016676 hypothetical protein 39081 40169 -1
CDS - ZP_05434419.1 ShiD9_010100016681 putative aminotransferase 40278 41438 1
CDS - ZP_05434420.1 ShiD9_010100016686 hypothetical protein 41439 42056 -1
CDS - ZP_05434421.1 ShiD9_010100016691 hypothetical protein 42041 43261 -1
CDS - ZP_05434422.1 ShiD9_010100016696 putative transcriptional regulator 43408 44310 -1
CDS dsbG ZP_05434423.1 ShiD9_010100016701 disulfide isomerase/thiol-disulfide oxidase 44519 45265 -1
CDS - ZP_05434424.1 ShiD9_010100016706 alkyl hydroperoxide reductase subunit C 45637 46200 1
CDS - ZP_05434425.1 ShiD9_010100016711 alkyl hydroperoxide reductase, F subunit 46329 47894 1
CDS - ZP_05434426.1 ShiD9_010100016716 universal stress protein UP12 48015 48443 -1
CDS - ZP_05434427.1 ShiD9_010100016721 predicted oxidoreductase, Zn-dependent and NAD(P)-binding protein 48664 49902 1
CDS - ZP_05434428.1 ShiD9_010100016726 nucleoside diphosphate kinase regulator 50133 50543 -1
CDS - ZP_05434429.1 ShiD9_010100016731 ribonuclease I 50773 51579 -1
CDS - ZP_05434430.1 ShiD9_010100016736 citrate:succinate antiporter 51693 53156 -1
CDS citG ZP_05434431.1 ShiD9_010100016741 triphosphoribosyl-dephospho-CoA synthase 53207 54085 -1
CDS citX ZP_05434432.1 ShiD9_010100016746 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 54060 54611 -1
CDS - ZP_05434433.1 ShiD9_010100016751 citrate lyase, citrate-ACP transferase (alpha) subunit 54615 56147 -1
CDS - ZP_05434434.1 ShiD9_010100016756 citrate lyase beta chain (acyl lyase subunit) 56158 57066 -1
CDS - ZP_05434435.1 ShiD9_010100016761 citrate lyase subunit gamma 57063 57359 -1
CDS - ZP_05434436.1 ShiD9_010100016766 citrate lyase synthetase 57374 58432 -1
CDS - ZP_05434437.1 ShiD9_010100016771 sensory histidine kinase in two-component regulatory system with citB 58812 60470 1
CDS dpiA ZP_05434438.1 ShiD9_010100016776 two-component response regulator DpiA 60439 61119 1
CDS dcuC ZP_05434439.1 ShiD9_010100016781 C4-dicarboxylate transporter DcuC 61160 62545 -1
CDS pagP ZP_05434440.1 ShiD9_010100016786 palmitoyl transferase 63134 63694 1
CDS cspE ZP_05434441.1 ShiD9_010100016791 cold shock protein CspE 63869 64078 1
CDS - ZP_05434442.1 ShiD9_010100016796 predicted inner membrane protein associated with chromosome condensation 64133 64516 -1
CDS - ZP_05434443.1 ShiD9_010100016801 carbon-nitrogen hydrolase 64609 65397 1
CDS tatE ZP_05434444.1 ShiD9_010100016806 twin arginine translocase protein E 65526 65729 1
CDS - ZP_05434445.1 ShiD9_010100016811 lipoyl synthase 65830 66795 -1
CDS - ZP_05434446.1 ShiD9_010100016816 putative DNA-binding transcriptional regulator 67004 67957 -1
CDS - ZP_05434447.1 ShiD9_010100016821 lipoyl-protein ligase 68216 68857 -1
CDS - ZP_05434448.1 ShiD9_010100016826 hypothetical protein 68958 69221 -1
CDS - ZP_05434449.1 ShiD9_010100016831 D-alanyl-D-alanine carboxypeptidase fraction A 69332 70543 -1
CDS - ZP_05434450.1 ShiD9_010100016836 rare lipoprotein A 70683 71771 -1
CDS - ZP_05434451.1 ShiD9_010100016841 cell wall shape-determining protein 71782 72894 -1
CDS - ZP_05434452.1 ShiD9_010100016846 penicillin-binding protein 2 72897 74798 -1
CDS - ZP_05434453.1 ShiD9_010100016851 rRNA large subunit methyltransferase 74829 75296 -1
CDS - ZP_05434454.1 ShiD9_010100016856 hypothetical protein 75300 75617 -1
CDS - ZP_05434455.1 ShiD9_010100016861 putative alpha-ribazole-5'-P phosphatase 75877 76488 -1
CDS nadD ZP_05434456.1 ShiD9_010100016866 nicotinic acid mononucleotide adenylyltransferase 76512 77153 -1
CDS holA ZP_05434457.1 ShiD9_010100016871 DNA polymerase III subunit delta 77155 78186 -1
CDS - ZP_05434458.1 ShiD9_010100016876 LPS-assembly lipoprotein RlpB 78186 78767 -1
CDS leuS ZP_05434459.1 ShiD9_010100016881 leucyl-tRNA synthetase 78782 81364 -1
CDS - ZP_05434460.1 ShiD9_010100016886 hypothetical protein 81599 82081 1
CDS - ZP_05434461.1 ShiD9_010100016891 hypothetical protein 82151 83128 -1
CDS - ZP_05434462.1 ShiD9_010100016896 hypothetical protein 83292 83999 1
CDS - ZP_05434463.1 ShiD9_010100016901 putative chaperone 83996 85423 1
CDS - ZP_05434464.1 ShiD9_010100016906 hypothetical protein 85433 85987 -1
CDS - ZP_05434465.1 ShiD9_010100016911 putative tRNA ligase 86089 86796 1
CDS - ZP_05434466.1 ShiD9_010100016916 hypothetical protein 86793 88244 1
CDS - ZP_05434467.1 ShiD9_010100016921 putative dnaK protein 88304 89974 -1
CDS rihA ZP_05434468.1 ShiD9_010100016926 ribonucleoside hydrolase 1 90058 90993 -1
CDS - ZP_05434469.1 ShiD9_010100016931 ATP-binding protein of glutamate-aspartate transport system 91111 91836 -1
CDS - ZP_05434470.1 ShiD9_010100016936 glutamate and aspartate transporter subunit, membrane component of ABC superfamily protein 91836 92510 -1
CDS - ZP_05434471.1 ShiD9_010100016941 glutamate and aspartate transporter subunit ; membrane component of ABC superfamily protein 92510 93250 -1
CDS - ZP_05434472.1 ShiD9_010100016946 glutamate and aspartate transporter subunit 93420 94328 -1
CDS - ZP_05434473.1 ShiD9_010100016951 hypothetical protein 94783 96660 1
CDS lnt ZP_05434474.1 ShiD9_010100016956 apolipoprotein N-acyltransferase 96738 98273 -1
CDS - ZP_05434475.1 ShiD9_010100016961 predicted ion transport 98298 99176 -1
CDS - ZP_05434476.1 ShiD9_010100016966 putative metalloprotease 99266 99733 -1
CDS - ZP_05434477.1 ShiD9_010100016971 predicted protein with nucleoside triphosphate hydrolase domain 99730 100770 -1
CDS - ZP_05434478.1 ShiD9_010100016976 isopentenyl-adenosine A37 tRNA methylthiolase 100923 102347 -1
CDS ubiF ZP_05434479.1 ShiD9_010100016981 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 102493 103668 1
tRNA - - ShiD9_010100t17103 tRNA-Gln 103822 103896 -1
tRNA - - ShiD9_010100t17105 tRNA-Gln 103934 104008 -1
tRNA - - ShiD9_010100t17107 tRNA-Met 104057 104133 -1
tRNA - - ShiD9_010100t17109 tRNA-Gln 104149 104223 -1
tRNA - - ShiD9_010100t17111 tRNA-Gln 104258 104332 -1