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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05435088.1 ShiD9_010100020050 putative transcriptional regulator 115 807 1
CDS - ZP_05435089.1 ShiD9_010100020055 putative transport protein 830 2257 1
CDS - ZP_05435090.1 ShiD9_010100020060 transcriptional repressor RbsR 2223 3206 -1
CDS - ZP_05435091.1 ShiD9_010100020065 ribokinase 3219 4163 -1
CDS - ZP_05435092.1 ShiD9_010100020070 D-ribose transporter subunit RbsB 4274 5164 -1
CDS rbsC ZP_05435093.1 ShiD9_010100020075 ribose ABC transporter permease protein 5189 6154 -1
CDS - ZP_05435094.1 ShiD9_010100020080 D-ribose transporter ATP binding protein 6159 7664 -1
CDS - ZP_05435095.1 ShiD9_010100020085 D-ribose pyranase 7672 8052 -1
CDS trkD ZP_05435096.1 ShiD9_010100020090 potassium transport protein Kup 8259 10127 -1
CDS - ZP_05435097.1 ShiD9_010100020095 regulatory ATPase RavA 10350 11846 1
CDS yieM ZP_05435098.1 ShiD9_010100020100 hypothetical protein 11840 13291 1
CDS - ZP_05435099.1 ShiD9_010100020105 asparagine synthetase AsnA 13296 14288 -1
CDS - ZP_05435100.1 ShiD9_010100020110 DNA-binding transcriptional regulator AsnC 14440 14898 1
CDS - ZP_05435101.1 ShiD9_010100020115 flavodoxin 14988 15431 1
CDS - ZP_05435102.1 ShiD9_010100020120 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 15810 17699 1
CDS gidB ZP_05435103.1 ShiD9_010100020125 16S rRNA methyltransferase GidB 17763 18386 1
CDS - ZP_05435104.1 ShiD9_010100020130 F0F1 ATP synthase subunit I 19003 19383 1
CDS - ZP_05435105.1 ShiD9_010100020135 F0F1 ATP synthase subunit A 19392 20207 1
CDS - ZP_05435106.1 ShiD9_010100020140 F0F1 ATP synthase subunit C 20254 20493 1
CDS - ZP_05435107.1 ShiD9_010100020145 F0F1 ATP synthase subunit B 20555 21025 1
CDS - ZP_05435108.1 ShiD9_010100020150 F0F1 ATP synthase subunit delta 21040 21573 1
CDS - ZP_05435109.1 ShiD9_010100020155 F0F1 ATP synthase subunit alpha 21586 23127 1
CDS - ZP_05435110.1 ShiD9_010100020160 F0F1 ATP synthase subunit gamma 23178 24041 1
CDS - ZP_05435111.1 ShiD9_010100020165 F0F1 ATP synthase subunit beta 24068 25450 1
CDS atpC ZP_05435112.1 ShiD9_010100020170 F0F1 ATP synthase subunit epsilon 25477 25890 1
CDS glmU ZP_05435113.1 ShiD9_010100020175 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 26241 27611 1
CDS - ZP_05435114.1 ShiD9_010100020180 glucosamine--fructose-6-phosphate aminotransferase 27773 29602 1
CDS - ZP_05435115.1 ShiD9_010100020185 Putative major fimbrial subunit 29904 30476 1
CDS - ZP_05435116.1 ShiD9_010100020190 putative fimbrial chaperone protein 30524 31255 1
CDS - ZP_05435117.1 ShiD9_010100020195 Putative fimbrial usher 31280 33802 1
CDS - ZP_05435118.1 ShiD9_010100020200 putative fimbrial protein LpfD; putative adhesin 33813 34886 1
CDS - ZP_05435119.1 ShiD9_010100020205 phosphate ABC transporter periplasmic substrate-binding protein PstS 35134 36174 1
CDS pstC ZP_05435120.1 ShiD9_010100020210 phosphate transporter permease subunit PstC 36261 37220 1
CDS pstA ZP_05435121.1 ShiD9_010100020215 phosphate transporter permease subunit PtsA 37220 38110 1
CDS - ZP_05435122.1 ShiD9_010100020220 phosphate transporter subunit 38201 38974 1
CDS - ZP_05435123.1 ShiD9_010100020225 transcriptional regulator PhoU 38989 39714 1
CDS - ZP_05435124.1 ShiD9_010100020230 transcriptional antiterminator BglG 40000 40836 1
CDS - ZP_05435125.1 ShiD9_010100020235 beta-glucoside-specific PTS system components IIABC 40970 42847 1
CDS - ZP_05435126.1 ShiD9_010100020240 cryptic phospho-beta-glucosidase B 42866 44260 1
CDS - ZP_05435127.1 ShiD9_010100020245 carbohydrate-specific outer membrane porin, cryptic 44346 45962 1
CDS - ZP_05435128.1 ShiD9_010100020250 putative xylanase 45989 47158 1
CDS - ZP_05435129.1 ShiD9_010100020255 putative 6-phosphogluconolactonase 47173 47895 1
CDS - ZP_05435130.1 ShiD9_010100020260 hypothetical protein 47957 48544 -1
CDS - ZP_05435131.1 ShiD9_010100020265 putative inner membrane protein 48593 49066 -1
CDS - ZP_05435132.1 ShiD9_010100020270 6-phosphogluconate phosphatase 49133 49798 -1
CDS - ZP_05435133.1 ShiD9_010100020275 hypothetical protein 49965 51302 1
CDS - ZP_05435134.1 ShiD9_010100020280 hypothetical protein 51356 51922 -1
CDS - ZP_05435135.1 ShiD9_010100020285 predicted phosphopantetheinyl transferase 51944 52693 -1
CDS - ZP_05435136.1 ShiD9_010100020290 DNA-binding transcriptional regulator YidZ 52850 53809 -1
CDS - ZP_05435137.1 ShiD9_010100020295 multidrug efflux system protein MdtL 53784 54959 -1
CDS - ZP_05435138.1 ShiD9_010100020300 tryptophan permease TnaB 55091 56338 -1
CDS tnaA ZP_05435139.1 ShiD9_010100020305 tryptophanase 56429 57844 -1
CDS trmE ZP_05435140.1 ShiD9_010100020310 tRNA modification GTPase TrmE 58382 59746 -1
CDS - ZP_05435141.1 ShiD9_010100020315 putative inner membrane protein translocase component YidC 59852 61498 -1
CDS - ZP_05435142.1 ShiD9_010100020320 hypothetical protein 61501 61758 -1
CDS rnpA ZP_05435143.1 ShiD9_010100020325 ribonuclease P 61722 62048 -1
CDS rpmH ZP_05435144.1 ShiD9_010100020330 50S ribosomal protein L34 62098 62238 -1
CDS dnaA ZP_05435145.1 ShiD9_010100020335 chromosomal replication initiation protein 62845 64248 1
CDS - ZP_05435146.1 ShiD9_010100020340 DNA polymerase III subunit beta 64253 65353 1
CDS recF ZP_05435147.1 ShiD9_010100020345 recombination protein F 65353 66426 1
CDS gyrB ZP_05435148.1 ShiD9_010100020350 DNA gyrase subunit B 66455 68869 1
CDS - ZP_05435149.1 ShiD9_010100020355 hypothetical protein 69109 69507 1
CDS - ZP_05435150.1 ShiD9_010100020360 sugar phosphatase 69622 70434 1
CDS - ZP_05435151.1 ShiD9_010100020365 hypothetical protein 70480 71136 -1
CDS - ZP_05435152.1 ShiD9_010100020370 predicted DNA-binding transcriptional regulator 71414 72103 1
CDS - ZP_05435153.1 ShiD9_010100020375 2-oxo-3-deoxygalactonate kinase 72100 72978 1
CDS - ZP_05435154.1 ShiD9_010100020380 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 72962 73579 1
CDS - ZP_05435155.1 ShiD9_010100020385 galactonate dehydratase 73576 74724 1
CDS - ZP_05435156.1 ShiD9_010100020390 D-galactonate transporter 74844 76136 1
CDS - ZP_05435157.1 ShiD9_010100020395 putative oxidoreductase 76133 77197 -1
CDS - ZP_05435158.1 ShiD9_010100020400 hypothetical protein 77298 78512 1
CDS - ZP_05435159.1 ShiD9_010100020405 hypothetical protein 78514 78774 -1
CDS - ZP_05435160.1 ShiD9_010100020410 heat shock protein IbpA 79152 79565 1
CDS - ZP_05435161.1 ShiD9_010100020415 heat shock chaperone IbpB 79677 80105 1
CDS - ZP_05435162.1 ShiD9_010100020420 hypothetical protein 80302 81963 1
CDS - ZP_05435163.1 ShiD9_010100020425 putative DNA-binding transcriptional regulator 81960 82676 -1
CDS - ZP_05435164.1 ShiD9_010100020430 putative PTS component 82972 84588 1
CDS - ZP_05435165.1 ShiD9_010100020435 truncated 6-phospho-alpha-glucosidase 84588 85226 1
CDS - ZP_05435166.1 ShiD9_010100020440 hypothetical protein 85226 85300 1
CDS - ZP_05435167.1 ShiD9_010100020445 predicted DNA-binding transcriptional regulator 85399 86292 -1
CDS - ZP_05435168.1 ShiD9_010100020450 putative symporter YidK 86459 88174 1
CDS - ZP_05435169.1 ShiD9_010100020455 putative sulfatase/phosphatase 88171 89664 1
CDS - ZP_05435170.1 ShiD9_010100020460 hypothetical protein 89711 90160 -1
CDS - ZP_05435171.1 ShiD9_010100020465 conserved inner membrane protein 90270 90617 1
CDS - ZP_05435172.1 ShiD9_010100020470 predicted inner membrane protein 90607 90969 1
CDS - ZP_05435173.1 ShiD9_010100020475 putative DNA-binding transcriptional regulator 90966 91463 1
CDS emrD ZP_05435174.1 ShiD9_010100020480 multidrug resistance protein D 91471 92622 -1
CDS - ZP_05435175.1 ShiD9_010100020485 hypothetical protein 93451 93933 -1
CDS - ZP_05435176.1 ShiD9_010100020490 acetolactate synthase catalytic subunit 93932 95620 1
CDS - ZP_05435177.1 ShiD9_010100020495 acetolactate synthase 1 regulatory subunit 95624 95914 1
CDS - ZP_05435178.1 ShiD9_010100020500 DNA-binding transcriptional activator UhpA 95926 96579 1
CDS - ZP_05435179.1 ShiD9_010100020505 sensory histidine kinase UhpB 96579 98081 1
CDS - ZP_05435180.1 ShiD9_010100020510 regulatory protein UhpC 98091 99410 1
CDS uhpT ZP_05435181.1 ShiD9_010100020515 sugar phosphate antiporter 99548 100939 1
CDS - ZP_05435182.1 ShiD9_010100020520 cryptic adenine deaminase 100984 102750 -1
CDS - ZP_05435183.1 ShiD9_010100020525 hypothetical protein 102913 104259 1
CDS - ZP_05435184.1 ShiD9_010100020530 hypothetical protein 104312 104764 1
CDS nepI ZP_05435185.1 ShiD9_010100020535 ribonucleoside transporter 104810 106165 1
CDS - ZP_05435186.1 ShiD9_010100020540 hypothetical protein 106206 106499 -1
CDS - ZP_05435187.1 ShiD9_010100020545 hypothetical protein 106504 106623 -1