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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS hemG ZP_05435271.1 ShiD9_010100020967 protoporphyrinogen oxidase 12 557 -1
CDS - ZP_05435272.1 ShiD9_010100020972 potassium transporter 569 2020 -1
CDS - ZP_05435273.1 ShiD9_010100020977 hypothetical protein 2059 2673 -1
CDS - ZP_05435274.1 ShiD9_010100020982 proline dipeptidase 2673 4004 -1
CDS fadB ZP_05435275.1 ShiD9_010100020987 multifunctional fatty acid oxidation complex subunit alpha 4194 6383 1
CDS fadA ZP_05435276.1 ShiD9_010100020992 3-ketoacyl-CoA thiolase 6393 7556 1
CDS fre ZP_05435277.1 ShiD9_010100020997 FMN reductase 7748 8449 -1
CDS - ZP_05435278.1 ShiD9_010100021002 3-octaprenyl-4-hydroxybenzoate decarboxylase 8495 9988 -1
CDS rfaH ZP_05435279.1 ShiD9_010100021007 transcriptional activator RfaH 10155 10643 1
CDS - ZP_05435280.1 ShiD9_010100021012 DNase TatD 10640 11422 -1
CDS - ZP_05435281.1 ShiD9_010100021017 twin-arginine protein translocation system subunit TatC 11464 12240 -1
CDS - ZP_05435282.1 ShiD9_010100021022 sec-independent translocase 12243 12758 -1
CDS tatA ZP_05435283.1 ShiD9_010100021027 twin arginine translocase protein A 12762 13031 -1
CDS ubiB ZP_05435284.1 ShiD9_010100021032 putative ubiquinone biosynthesis protein UbiB 13110 14750 -1
CDS - ZP_05435285.1 ShiD9_010100021037 hypothetical protein 14747 15352 -1
CDS ubiE ZP_05435286.1 ShiD9_010100021042 ubiquinone/menaquinone biosynthesis methyltransferase 15366 16121 -1
CDS - ZP_05435287.1 ShiD9_010100021047 DNA recombination protein RmuC 16216 17628 -1
CDS - ZP_05435288.1 ShiD9_010100021052 uridine phosphorylase 17784 18545 -1
CDS - ZP_05435289.1 ShiD9_010100021057 putative enzyme 18807 19622 1
CDS - ZP_05435290.1 ShiD9_010100021062 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 19661 21922 -1
CDS - ZP_05435291.1 ShiD9_010100021067 DNA-binding transcriptional activator, homocysteine-binding protein 22040 22993 1
CDS - ZP_05435292.1 ShiD9_010100021072 predicted inner membrane protein 22881 23780 -1
CDS - ZP_05435293.1 ShiD9_010100021077 putative sugar phosphatase 23856 24656 -1
CDS - ZP_05435294.1 ShiD9_010100021082 lysophospholipase L2 24664 25686 -1
CDS rhtB ZP_05435295.1 ShiD9_010100021087 homoserine/homoserine lactone efflux protein 25797 26417 1
CDS - ZP_05435296.1 ShiD9_010100021092 threonine efflux system 26479 27099 -1
CDS - ZP_05435297.1 ShiD9_010100021097 ATP-dependent DNA helicase RecQ 27163 28998 -1
CDS - ZP_05435298.1 ShiD9_010100021102 phospholipase A 29125 29994 -1
CDS - ZP_05435299.1 ShiD9_010100021107 hypothetical protein 30159 30626 1
CDS - ZP_05435300.1 ShiD9_010100021112 putative chloramphenicol resistance permease 30678 31565 1
CDS - ZP_05435301.1 ShiD9_010100021117 hypothetical protein 31612 31911 -1
CDS - ZP_05435302.1 ShiD9_010100021122 magnesium/nickel/cobalt transporter CorA 32540 32659 -1
CDS - ZP_05435303.1 ShiD9_010100021127 hypothetical protein 32873 33721 1
CDS - ZP_05435304.1 ShiD9_010100021132 hypothetical protein 33718 34197 1
CDS - ZP_05435305.1 ShiD9_010100021137 magnesium/nickel/cobalt transporter CorA 34251 35201 -1
CDS - ZP_05435306.1 ShiD9_010100021142 hypothetical protein 35445 35579 -1
CDS - ZP_05435307.1 ShiD9_010100021147 hypothetical protein 35571 36335 1
CDS uvrD ZP_05435308.1 ShiD9_010100021152 DNA-dependent helicase II 36482 38644 -1
CDS - ZP_05435309.1 ShiD9_010100021157 flavin mononucleotide phosphatase 38728 39444 -1
CDS xerC ZP_05435310.1 ShiD9_010100021162 site-specific tyrosine recombinase XerC 39444 40340 -1
CDS - ZP_05435311.1 ShiD9_010100021167 hypothetical protein 40337 41044 -1
CDS dapF ZP_05435312.1 ShiD9_010100021172 diaminopimelate epimerase 41041 41865 -1
CDS - ZP_05435313.1 ShiD9_010100021177 putative lipoprotein 41902 42105 -1
CDS - ZP_05435314.1 ShiD9_010100021182 hypothetical protein 42455 43009 1
CDS - ZP_05435315.1 ShiD9_010100021187 hypothetical protein 43377 44855 1
CDS - ZP_05435316.1 ShiD9_010100021192 hypothetical protein 44852 46165 1
CDS cyaY ZP_05435317.1 ShiD9_010100021197 frataxin-like protein 46213 46533 1
CDS cyaA ZP_05435318.1 ShiD9_010100021202 adenylate cyclase 46573 49119 -1
CDS hemC ZP_05435319.1 ShiD9_010100021207 porphobilinogen deaminase 49506 50447 1
CDS hemD ZP_05435320.1 ShiD9_010100021212 uroporphyrinogen-III synthase 50444 51184 1
CDS - ZP_05435321.1 ShiD9_010100021217 putative uroporphyrinogen III C-methyltransferase 51206 52435 1
CDS - ZP_05435322.1 ShiD9_010100021222 hypothetical protein 52329 52439 -1
CDS - ZP_05435323.1 ShiD9_010100021227 putative protoheme IX biogenesis protein 52438 53634 1
CDS - ZP_05435324.1 ShiD9_010100021232 hypothetical protein 54313 54474 1
CDS - ZP_05435325.1 ShiD9_010100021237 regulator of arylsulfatase activity 54558 55793 -1
tRNA - - ShiD9_010100t21404 tRNA-Pro 55940 56016 -1
tRNA - - ShiD9_010100t21406 tRNA-Leu 56059 56145 -1
tRNA - - ShiD9_010100t21408 tRNA-His 56166 56241 -1
tRNA - - ShiD9_010100t21410 tRNA-Arg 56300 56376 -1
CDS - ZP_05435326.1 ShiD9_010100021242 putative transport protein YifK 56479 57864 -1
CDS - ZP_05435327.1 ShiD9_010100021247 putative UDP-N-acetyl-D-mannosaminuronic acid transferase 58055 58795 -1
CDS - ZP_05435328.1 ShiD9_010100021252 putative common antigen polymerase 58798 60150 -1
CDS - ZP_05435329.1 ShiD9_010100021257 4-alpha-L-fucosyltransferase 60147 61226 -1
CDS - ZP_05435330.1 ShiD9_010100021262 O-antigen translocase 61223 62473 -1
CDS - ZP_05435331.1 ShiD9_010100021267 TDP-4-oxo-6-deoxy-D-glucose transaminase 62475 63605 -1
CDS - ZP_05435332.1 ShiD9_010100021272 TDP-fucosamine acetyltransferase 63610 64284 -1
CDS - ZP_05435333.1 ShiD9_010100021277 glucose-1-phosphate thymidylyltransferase 64262 65143 -1
CDS - ZP_05435334.1 ShiD9_010100021282 dTDP-glucose 4,6-dehydratase 65162 66229 -1
CDS wecC ZP_05435335.1 ShiD9_010100021287 UDP-N-acetyl-D-mannosamine dehydrogenase 66229 67491 -1
CDS - ZP_05435336.1 ShiD9_010100021292 UDP-N-acetylglucosamine 2-epimerase 67488 68618 -1
CDS - ZP_05435337.1 ShiD9_010100021297 lipopolysaccharide biosynthesis protein WzzE 68674 69720 -1
CDS - ZP_05435338.1 ShiD9_010100021302 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 69732 70835 -1
CDS - ZP_05435339.1 ShiD9_010100021307 hypothetical protein 70847 71065 -1
CDS rho ZP_05435340.1 ShiD9_010100021312 transcription termination factor Rho 71075 72334 -1
CDS - ZP_05435341.1 ShiD9_010100021317 putative rho operon leader peptide 72419 72520 -1
CDS trxA ZP_05435342.1 ShiD9_010100021322 thioredoxin 72661 72990 -1
CDS - ZP_05435343.1 ShiD9_010100021327 ATP-dependent RNA helicase RhlB 73121 74386 1
CDS - ZP_05435344.1 ShiD9_010100021332 guanosine pentaphosphate phosphohydrolase 74520 76004 1
CDS - ZP_05435345.1 ShiD9_010100021337 ATP-dependent DNA helicase Rep 76051 78072 -1
CDS - ZP_05435346.1 ShiD9_010100021342 hypothetical protein 78289 78738 1
CDS - ZP_05435347.1 ShiD9_010100021347 peptidyl-prolyl cis-trans isomerase C (rotamase C) 78937 79218 1
CDS - ZP_05435348.1 ShiD9_010100021352 ketol-acid reductoisomerase 79305 80780 -1
CDS - ZP_05435349.1 ShiD9_010100021357 DNA-binding transcriptional regulator IlvY 80930 81823 1
CDS - ZP_05435350.1 ShiD9_010100021362 threonine dehydratase 81875 83419 -1
CDS - ZP_05435351.1 ShiD9_010100021367 dihydroxy-acid dehydratase 83422 85272 -1
CDS - ZP_05435352.1 ShiD9_010100021372 branched-chain amino acid aminotransferase 85337 86266 -1
CDS ilvM ZP_05435353.1 ShiD9_010100021377 acetolactate synthase 2 regulatory subunit 86286 86549 -1
CDS - ZP_05435354.1 ShiD9_010100021382 acetolactate synthase 2 catalytic subunit 86546 88192 -1
CDS - ZP_05435355.1 ShiD9_010100021387 putative ATP-dependent protease 88783 90303 1
CDS - ZP_05435356.1 ShiD9_010100021392 hypothetical protein 90328 90666 -1
CDS - ZP_05435357.1 ShiD9_010100021397 transcriptional regulator HdfR 90785 91624 1
tRNA - - ShiD9_010100t21412 tRNA-Trp 91720 91795 -1
tRNA - - ShiD9_010100t21414 tRNA-Asp 91804 91880 -1