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Sphingomonas sp. SKA58, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - SKA58_r02783 16S ribosomal RNA 1 836 1
rRNA - - SKA58_r02787 23S ribosomal RNA 1 4385 1
tRNA - - SKA58_t02767 tRNA-Ile 999 1072 1
tRNA - - SKA58_t02769 tRNA-Ala 1093 1165 1
rRNA - - SKA58_r02779 5S ribosomal RNA 4555 4670 1
tRNA - - SKA58_t02771 tRNA-Met 4875 4948 1
CDS - ZP_01301482.1 SKA58_00370 transposase 5350 6534 1
CDS - ZP_01301483.1 SKA58_00375 hypothetical protein 7012 7521 -1
CDS - ZP_01301484.1 SKA58_00380 HAD-superfamily hydrolase subfamily IIB 7552 8928 1
CDS - ZP_01301485.1 SKA58_00385 hypothetical protein 8925 10070 1
CDS - ZP_01301486.1 SKA58_00390 hypothetical protein 10067 11008 1
CDS - ZP_01301487.1 SKA58_00395 probable galactosyltransferase 11065 12078 1
CDS - ZP_01301488.1 SKA58_00400 exopolysaccharide polymerization protein 12048 12956 1
CDS - ZP_01301489.1 SKA58_00405 probable glycosyl transferase 12961 13878 1
CDS - ZP_01301490.1 SKA58_00410 outer membrane component of multidrug efflux pump 13865 15271 -1
CDS - ZP_01301491.1 SKA58_00415 membrane fusion protein 15331 16395 -1
CDS - ZP_01301492.1 SKA58_00420 toxin secretion ABC transporter ATP-binding protein 16392 18080 -1
CDS - ZP_01301493.1 SKA58_00425 sensor histidine kinase 18216 19928 -1
CDS - ZP_01301494.1 SKA58_00430 probable dienelactone hydrolase protein 20106 21161 -1
CDS - ZP_01301495.1 SKA58_00435 transcriptional regulator, LysR family protein 21205 22080 -1
CDS - ZP_01301496.1 SKA58_00440 isovaleryl-CoA dehydrogenase 22177 23334 1
CDS - ZP_01301497.1 SKA58_00445 propionyl-CoA carboxylase, beta subunit, putative 23331 24932 1
CDS - ZP_01301498.1 SKA58_00450 Carbamoyl-phosphate synthase L chain, ATP-binding protein 24932 26791 1
CDS - ZP_01301499.1 SKA58_00455 MaoC-like dehydratase 26788 27240 1
CDS - ZP_01301500.1 SKA58_00460 citrate lyase, beta subunit protein 27243 28067 1
CDS - ZP_01301501.1 SKA58_00465 probable transcriptional regulator protein, Fnr/CRP family protein 28105 28671 -1
CDS - ZP_01301502.1 SKA58_00470 hypothetical protein 28840 29373 1
CDS - ZP_01301503.1 SKA58_00475 hypothetical protein 29419 29550 -1
CDS - ZP_01301504.1 SKA58_00480 probable transcriptional regulator, Crp/Fnr family protein 29770 30399 1
CDS - ZP_01301505.1 SKA58_00485 probable transcriptional regulator protein, Fnr/CRP family protein 30707 31456 1
CDS - ZP_01301506.1 SKA58_00490 hypothetical protein 31711 31884 1
CDS - ZP_01301507.1 SKA58_00495 Streptomyces cyclase/dehydrase 31896 32399 1
CDS - ZP_01301508.1 SKA58_00500 Putative Glutathione-dependent formaldehyde dehydrogenase 32399 33592 1
CDS - ZP_01301509.1 SKA58_00505 hypothetical protein 33613 34215 1
CDS - ZP_01301510.1 SKA58_00510 putative short chain oxidoreductase protein 34212 35006 1
CDS - ZP_01301511.1 SKA58_00515 probable mannose-6-phosphate isomerase 35262 36068 -1
CDS - ZP_01301512.1 SKA58_00520 hypothetical protein 36065 36166 -1
CDS - ZP_01301513.1 SKA58_00525 fructokinase 36187 36840 -1
CDS - ZP_01301514.1 SKA58_00530 hypothetical protein 37217 37450 -1
CDS - ZP_01301515.1 SKA58_00535 hypothetical protein 37512 38423 -1
CDS - ZP_01301516.1 SKA58_00540 Sodium/hydrogen exchanger 38498 39784 -1
CDS - ZP_01301517.1 SKA58_00545 sensory box histidine kinase/response regulator 39826 42816 -1
CDS - ZP_01301518.1 SKA58_00550 hypothetical protein 42995 43648 -1
CDS - ZP_01301519.1 SKA58_00555 hypothetical protein 43833 44021 1
CDS - ZP_01301520.1 SKA58_00560 hypothetical protein 44182 45126 1
CDS - ZP_01301521.1 SKA58_00565 hypothetical protein 45146 45349 -1
CDS - ZP_01301522.1 SKA58_00570 short-chain dehydrogenase/reductase SDR 45439 46155 -1
CDS - ZP_01301523.1 SKA58_00575 hypothetical protein 46134 46955 -1
CDS - ZP_01301524.1 SKA58_00580 methylmalonate-semialdehyde dehydrogenase, putative 46969 48468 -1
CDS - ZP_01301525.1 SKA58_00585 transcriptional regulator, LysR family protein 48557 49447 1
CDS - ZP_01301526.1 SKA58_00590 Beta-glucosidase 49457 51883 -1
CDS - ZP_01301527.1 SKA58_00595 major facilitator superfamily MFS_1 51947 53149 -1
CDS - ZP_01301528.1 SKA58_00600 transcriptional regulator, LacI family protein 53142 54209 -1
CDS - ZP_01301529.1 SKA58_00605 Glucan endo-1,3-beta-D-glucosidase 54217 55152 -1
CDS - ZP_01301530.1 SKA58_00610 tryptophan halogenase 55149 56651 -1
CDS - ZP_01301531.1 SKA58_00615 hypothetical protein 56648 57676 -1
CDS - ZP_01301532.1 SKA58_00620 SapC 57669 58391 -1
CDS - ZP_01301533.1 SKA58_00625 TonB-dependent receptor 58500 61406 -1
CDS - ZP_01301534.1 SKA58_00630 Catalase 61645 63804 -1
CDS - ZP_01301535.1 SKA58_00635 hypothetical protein 63939 65936 -1
CDS - ZP_01301536.1 SKA58_00640 transporter, putative 66062 67621 1
CDS - ZP_01301537.1 SKA58_00645 hypothetical protein 67836 67988 -1
CDS - ZP_01301538.1 SKA58_00650 probable outer membrane multidrug efflux lipoprotein, OMF family 68230 69594 -1
CDS - ZP_01301539.1 SKA58_00655 multidrug efflux protein, RND family 69591 72731 -1
CDS - ZP_01301540.1 SKA58_00660 Secretion protein HlyD 72741 73820 -1
CDS - ZP_01301541.1 SKA58_00665 DNA-binding response regulator 74239 74967 1
CDS - ZP_01301542.1 SKA58_00670 predicted histidine kinase-like ATPase 74964 76328 1
CDS - ZP_01301543.1 SKA58_00675 hypothetical protein 76333 76659 -1
CDS - ZP_01301544.1 SKA58_00680 hypothetical protein 76656 78167 -1
CDS - ZP_01301545.1 SKA58_00685 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 78164 78466 -1
CDS - ZP_01301546.1 SKA58_00690 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 78636 79268 -1
CDS - ZP_01301547.1 SKA58_00695 2-oxo-3-deoxygalactonate kinase 79265 80131 -1
CDS - ZP_01301548.1 SKA58_00700 hypothetical protein 80271 80942 1
CDS - ZP_01301549.1 SKA58_00705 hypothetical protein 80981 81244 1
CDS - ZP_01301550.1 SKA58_00710 hypothetical protein 81304 81546 -1
CDS - ZP_01301551.1 SKA58_00715 Leucine dehydrogenase 81798 82898 -1
CDS - ZP_01301552.1 SKA58_00720 transcriptional regulator, AsnC family protein 82980 83441 1
CDS - ZP_01301553.1 SKA58_00725 gamma-glutamyltranspeptidase precursor 83465 85297 -1
CDS - ZP_01301554.1 SKA58_00730 TonB-dependent receptor 85297 88719 -1
CDS - ZP_01301555.1 SKA58_00735 two-component system regulatory protein 89158 89688 1
CDS - ZP_01301556.1 SKA58_00740 putative transcriptional regulator, putative 89624 90580 1
CDS - ZP_01301557.1 SKA58_00745 gamma-glutamyltranspeptidase 90644 92518 1
CDS - ZP_01301558.1 SKA58_00750 hypothetical protein 92552 95488 1
CDS - ZP_01301559.1 SKA58_00755 catalase 95534 97741 -1
CDS - ZP_01301560.1 SKA58_00760 sensory box/GGDEF family protein 97962 99431 1
CDS - ZP_01301561.1 SKA58_00765 TonB-dependent receptor 99658 102351 1
CDS - ZP_01301562.1 SKA58_00770 hypothetical protein 102348 103046 1
CDS - ZP_01301563.1 SKA58_00775 hypothetical protein 103068 105758 1
CDS - ZP_01301564.1 SKA58_00780 oligogalacturonate lyase 105773 107086 1
CDS - ZP_01301565.1 SKA58_00785 putative transcriptional regulator (TetR family) protein 107096 107737 -1
CDS - ZP_01301566.1 SKA58_00790 acetyl-CoA acetyltransferase 107857 109041 1
CDS - ZP_01301567.1 SKA58_00795 Short-chain dehydrogenase/reductase SDR 109058 109819 1
CDS - ZP_01301568.1 SKA58_00800 alanine dehydrogenase/PNT-like protein 110051 111172 1
CDS - ZP_01301569.1 SKA58_00805 probable NAD(P) transhydrogenase subunit alpha part 2 transmembraneprotein 111257 111541 1
CDS - ZP_01301570.1 SKA58_00810 NAD(P) transhydrogenase, beta subunit 111538 112959 1
CDS - ZP_01301571.1 SKA58_00815 proton/glutamate symporter 112943 114217 -1
CDS - ZP_01301572.1 SKA58_00820 mandelate racemase 114220 115212 -1
CDS - ZP_01301573.1 SKA58_00825 hypothetical protein 115218 116249 -1
CDS - ZP_01301574.1 SKA58_00830 transcription regulator, LysR family protein 116344 117228 -1
CDS - ZP_01301575.1 SKA58_00835 amidohydrolase family protein 117395 119044 1