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Sphingomonas sp. SKA58, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_01303253.1 SKA58_16103 CP4-6 prophage 326 1171 1
CDS - ZP_01303254.1 SKA58_16108 hypothetical protein 1419 1670 1
CDS - ZP_01303255.1 SKA58_16113 hypothetical protein 1810 2073 1
CDS - ZP_01303256.1 SKA58_16118 hypothetical protein 2232 3008 1
CDS - ZP_01303257.1 SKA58_16123 hypothetical protein 3128 3394 1
CDS - ZP_01303258.1 SKA58_16128 putative replication protein A 3401 4294 1
CDS - ZP_01303259.1 SKA58_16133 hypothetical protein 4566 5087 1
CDS - ZP_01303260.1 SKA58_16138 conjugal transfer protein precursor 5084 5662 1
CDS - ZP_01303261.1 SKA58_16143 hypothetical protein 5643 5975 1
CDS - ZP_01303262.1 SKA58_16148 lytic transglycosylase, catalytic 6165 6881 1
CDS - ZP_01303263.1 SKA58_16153 hypothetical protein 7141 8871 1
CDS - ZP_01303264.1 SKA58_16158 gp38 9286 9867 1
CDS - ZP_01303265.1 SKA58_16163 hypothetical protein 9879 10757 1
CDS - ZP_01303266.1 SKA58_16168 hypothetical protein 10761 11840 -1
CDS - ZP_01303267.1 SKA58_16173 plasmid transfer factor; TraG 12048 14114 1
CDS - ZP_01303268.1 SKA58_16178 hypothetical protein 14111 14530 1
CDS - ZP_01303269.1 SKA58_16183 type II secretion system protein E 14719 15657 1
CDS - ZP_01303270.1 SKA58_16188 Conjugal transfer protein TrbC 15654 15989 1
CDS - ZP_01303271.1 SKA58_16193 conjugal transfer protein trbD 15986 16267 1
CDS - ZP_01303272.1 SKA58_16198 CagE, TrbE, VirB component of type IV transporter system 16252 18720 1
CDS - ZP_01303273.1 SKA58_16203 putative conjugal transfer protein TrbJ 18717 19433 1
CDS - ZP_01303274.1 SKA58_16208 hypothetical protein 19444 19755 1
CDS - ZP_01303275.1 SKA58_16213 probable conjugal transfer protein 19752 21137 1
CDS - ZP_01303276.1 SKA58_16218 Conjugal transfer protein 21144 21827 1
CDS - ZP_01303277.1 SKA58_16223 Conjugal transfer protein TrbG/VirB9/CagX 21824 22849 1
CDS - ZP_01303278.1 SKA58_16228 conjugation TrbI-like protein 22846 24078 1
CDS - ZP_01303279.1 SKA58_16233 hypothetical protein 24075 24296 1
CDS - ZP_01303280.1 SKA58_16238 hypothetical protein 24314 24622 -1
CDS - ZP_01303281.1 SKA58_16243 transcriptional regulator, LysR family protein 24619 25566 -1
CDS - ZP_01303282.1 SKA58_16248 Acetyl-CoA C-acetyltransferase 25682 26875 -1
CDS - ZP_01303283.1 SKA58_16253 aminoglycoside phosphotransferase 27012 28124 -1
CDS - ZP_01303284.1 SKA58_16258 acyl-CoA dehydrogenase-like protein 28073 29212 -1
CDS - ZP_01303285.1 SKA58_16263 3-oxoacid CoA-transferase, subunit B 29230 29886 -1
CDS - ZP_01303286.1 SKA58_16268 3-ketoacid CoA transferase alpha subunit 29886 30608 -1
CDS - ZP_01303287.1 SKA58_16273 oxidoreductase, short chain dehydrogenase/reductase family protein 30610 31374 -1
CDS - ZP_01303288.1 SKA58_16278 riboflavin biosynthesis protein (RibA) 31367 32395 -1
CDS - ZP_01303289.1 SKA58_16283 NADPH-dependent FMN reductase 32406 33002 -1
CDS - ZP_01303290.1 SKA58_16288 Zinc-containing alcohol dehydrogenase superfamily protein 33157 34227 1
CDS - ZP_01303291.1 SKA58_16293 dehydrogenase 34294 35070 -1
CDS - ZP_01303292.1 SKA58_16298 short chain dehydrogenase 35098 35421 -1
CDS - ZP_01303293.1 SKA58_16303 short chain dehydrogenase 35440 36198 -1
CDS - ZP_01303294.1 SKA58_16308 hypothetical protein 36195 36998 -1
CDS - ZP_01303295.1 SKA58_16313 Alpha/beta hydrolase 37056 37823 -1
CDS - ZP_01303296.1 SKA58_16318 flavin-dependent oxidoreductase 37836 39104 -1
CDS - ZP_01303297.1 SKA58_16323 hypothetical protein 39161 39925 -1
CDS - ZP_01303298.1 SKA58_16328 TonB-dependent receptor 40011 42377 -1
CDS - ZP_01303299.1 SKA58_16333 probable transcriptional regulator, TetR family protein 42807 43481 1
CDS - ZP_01303300.1 SKA58_16338 probable oxidoreductase 43726 44649 -1
CDS - ZP_01303301.1 SKA58_16343 NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR 45017 45862 1
CDS - ZP_01303302.1 SKA58_16348 NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR 45889 46680 1
CDS - ZP_01303303.1 SKA58_16353 putative dehydrogenase 46691 47494 1
CDS - ZP_01303304.1 SKA58_16358 putative transporter 47479 49029 1
CDS - ZP_01303305.1 SKA58_16363 Zinc-containing alcohol dehydrogenase superfamily protein 49030 50061 1
CDS - ZP_01303306.1 SKA58_16368 Predicted alpha/beta hydrolase 50192 51094 1
CDS - ZP_01303307.1 SKA58_16373 hypothetical protein 51529 51600 1
CDS - ZP_01303308.1 SKA58_16378 putative monooxygenase 51744 53525 1
CDS - ZP_01303309.1 SKA58_16383 hypothetical protein 53624 54016 1
CDS - ZP_01303310.1 SKA58_16388 hypothetical protein 54229 54339 -1
CDS - ZP_01303311.1 SKA58_16393 phage integrase 54693 55994 -1
CDS - ZP_01303312.1 SKA58_16398 hypothetical protein 56479 56874 -1
CDS - ZP_01303313.1 SKA58_16403 hypothetical protein 56916 58355 -1
CDS - ZP_01303314.1 SKA58_16408 hypothetical protein 58554 58862 -1
CDS - ZP_01303315.1 SKA58_16413 hypothetical protein 58859 60271 -1
CDS - ZP_01303316.1 SKA58_16418 hypothetical protein 60358 61212 -1
CDS - ZP_01303317.1 SKA58_16423 hypothetical protein 61250 61690 -1
CDS - ZP_01303318.1 SKA58_16428 hypothetical protein 61801 62475 -1
CDS - ZP_01303319.1 SKA58_16433 hypothetical protein 62492 63049 -1
CDS - ZP_01303320.1 SKA58_16438 hypothetical protein 63143 63436 -1
CDS - ZP_01303321.1 SKA58_16443 hypothetical protein 63532 64164 -1
CDS - ZP_01303322.1 SKA58_16448 hypothetical protein 64313 64660 -1
CDS - ZP_01303323.1 SKA58_16453 translocation protein in type III secretion 64657 65463 -1
CDS - ZP_01303324.1 SKA58_16458 hypothetical protein 65463 65732 -1
CDS - ZP_01303325.1 SKA58_16463 Type III secretory pathway, component EscR 65725 66375 -1
CDS - ZP_01303326.1 SKA58_16468 hypothetical protein 66380 66661 -1
CDS - ZP_01303327.1 SKA58_16473 hypothetical protein 66689 67300 -1
CDS - ZP_01303328.1 SKA58_16478 hypothetical protein 67330 67638 -1
CDS - ZP_01303329.1 SKA58_16483 yscU; putative type III secretion protein 67635 68762 -1
CDS - ZP_01303330.1 SKA58_16488 Lytic transglycosylase, catalytic 69227 70015 1
CDS - ZP_01303331.1 SKA58_16493 putative type III secretion pore protein 70015 71979 1
CDS - ZP_01303332.1 SKA58_16498 putative type III secretion protein YscC 71985 73784 1
CDS - ZP_01303333.1 SKA58_16503 hypothetical protein 73781 74935 1
CDS - ZP_01303334.1 SKA58_16508 hypothetical protein 74959 75273 1
CDS - ZP_01303335.1 SKA58_16513 hypothetical protein 75270 75656 1
CDS - ZP_01303336.1 SKA58_16518 hrp conserved lipoprotein hrcj transmembrane 75676 76416 1
CDS - ZP_01303337.1 SKA58_16523 type III secretion system ATPase 76413 76856 1
CDS - ZP_01303338.1 SKA58_16528 hypothetical protein 76841 77446 1
CDS - ZP_01303339.1 SKA58_16533 type III secretion system ATPase 77436 78746 1
CDS - ZP_01303340.1 SKA58_16538 hypothetical protein 78746 79204 1
CDS - ZP_01303341.1 SKA58_16543 hypothetical protein 79201 79857 1
CDS - ZP_01303342.1 SKA58_16548 hypothetical protein 80038 80277 -1
CDS - ZP_01303343.1 SKA58_16553 hypothetical protein 80274 80666 -1
CDS - ZP_01303344.1 SKA58_16558 hypothetical protein 80748 80882 -1
CDS - ZP_01303345.1 SKA58_16563 putative DNA repair helicase 81034 83214 -1
CDS - ZP_01303346.1 SKA58_16568 hypothetical protein 83216 83689 -1
CDS - ZP_01303347.1 SKA58_16573 hypothetical protein 83692 85713 -1
CDS - ZP_01303348.1 SKA58_16578 hypothetical protein 85716 85880 -1
CDS - ZP_01303349.1 SKA58_16583 putative phage-related protein 86004 86831 -1
CDS - ZP_01303350.1 SKA58_16588 putative ATP-binding protein 86828 90178 -1
CDS - ZP_01303351.1 SKA58_16593 hypothetical protein 90175 90822 -1
CDS - ZP_01303352.1 SKA58_16598 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme 91268 92419 1