xBASE Logo
About | Contact | Home

Sphingomonas sp. SKA58, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_01303733.1 SKA58_13203 translation initiation factor IF-2 41 2611 -1
CDS - ZP_01303734.1 SKA58_13208 hypothetical protein 2680 3339 -1
CDS - ZP_01303735.1 SKA58_13213 putative isomerase 3403 3636 -1
CDS - ZP_01303736.1 SKA58_13218 NusA antitermination factor 3642 5210 -1
CDS - ZP_01303737.1 SKA58_13223 hypothetical protein 3876 5531 1
CDS - ZP_01303738.1 SKA58_13228 hypothetical protein 5225 5815 -1
CDS - ZP_01303739.1 SKA58_13233 dehydrogenase 5922 7070 1
CDS - ZP_01303740.1 SKA58_13238 CTP synthase 7134 8765 -1
CDS - ZP_01303741.1 SKA58_13243 preprotein translocase, SecG subunit 8856 9224 -1
CDS - ZP_01303742.1 SKA58_13248 Triosephosphate isomerase 9346 10107 -1
CDS - ZP_01303743.1 SKA58_13253 hypothetical protein 10310 12262 1
CDS - ZP_01303744.1 SKA58_13258 anthranilate synthase component I 12265 13782 1
CDS - ZP_01303745.1 SKA58_13263 hypothetical protein 13790 14515 -1
CDS - ZP_01303746.1 SKA58_13268 NUDIX hydrolase 14519 15289 -1
tRNA - - SKA58_t13807 tRNA-Ala 15358 15430 -1
CDS - ZP_01303747.1 SKA58_13273 hypothetical protein 15642 16571 1
CDS - ZP_01303748.1 SKA58_13278 ATP-dependent helicase 16681 19386 1
CDS - ZP_01303749.1 SKA58_13283 RNA-binding S4 19379 19675 1
CDS - ZP_01303750.1 SKA58_13288 Aspartate racemase 19694 20383 -1
CDS - ZP_01303751.1 SKA58_13293 hypothetical protein 20458 21081 -1
CDS - ZP_01303752.1 SKA58_13298 hypothetical protein 21078 21356 -1
CDS - ZP_01303753.1 SKA58_13303 hypothetical protein 21397 21522 -1
CDS - ZP_01303754.1 SKA58_13308 two component, sigma54 specific, transcriptional regulator, Fis family protein 21707 23131 1
CDS - ZP_01303755.1 SKA58_13313 hypothetical protein 23198 23824 1
CDS - ZP_01303756.1 SKA58_13318 hypothetical protein 23831 24631 -1
CDS - ZP_01303757.1 SKA58_13323 cytochrome oxidase assembly 24628 25752 -1
CDS - ZP_01303758.1 SKA58_13328 dihydroxy-acid dehydratase 25824 27656 1
CDS - ZP_01303759.1 SKA58_13333 probable ketoglutarate semialdehyde dehydrogenase protein 27782 29359 1
CDS - ZP_01303760.1 SKA58_13338 Oxidoreductase 29359 30279 1
CDS - ZP_01303761.1 SKA58_13343 transcriptional regulator, GntR family protein 30297 31031 1
CDS - ZP_01303762.1 SKA58_13348 putative ribonuclease protein 31119 32030 1
tRNA - - SKA58_t13805 tRNA-Trp 32098 32170 1
CDS - ZP_01303763.1 SKA58_13353 SecE subunit of protein translocation complex 32344 32550 1
CDS - ZP_01303764.1 SKA58_13358 NusG antitermination factor 32572 33108 1
CDS - ZP_01303765.1 SKA58_13363 ribosomal protein L11 33236 33667 1
CDS - ZP_01303766.1 SKA58_13368 ribosomal protein L1 33672 34370 1
CDS - ZP_01303767.1 SKA58_13373 DEAD/DEAH box helicase-like protein 34659 36401 1
CDS - ZP_01303768.1 SKA58_13378 hypothetical protein 36468 38003 1
CDS - ZP_01303769.1 SKA58_13383 Potassium efflux system protein 38010 39638 -1
CDS - ZP_01303770.1 SKA58_13388 hypothetical protein 39706 39843 -1
CDS - ZP_01303771.1 SKA58_13393 hypothetical protein 39905 40303 -1
CDS - ZP_01303772.1 SKA58_13398 ribosomal protein L21 40490 40789 1
CDS - ZP_01303773.1 SKA58_13403 ribosomal protein L27 40822 41091 1
CDS - ZP_01303774.1 SKA58_13408 acetyltransferase, GNAT family protein 41365 41937 1
CDS - ZP_01303775.1 SKA58_13413 hypothetical protein 41990 42523 -1
CDS - ZP_01303776.1 SKA58_13418 FF domain protein 42556 43419 -1
CDS - ZP_01303777.1 SKA58_13423 transcriptional regulator, TetR family protein 43525 44091 1
CDS - ZP_01303778.1 SKA58_13428 Small GTP-binding protein domain 44122 45213 1
CDS - ZP_01303779.1 SKA58_13433 gamma-glutamyl kinase 45313 46440 1
CDS - ZP_01303780.1 SKA58_13438 NAD-dependent epimerase/dehydratase 46444 47361 1
CDS - ZP_01303781.1 SKA58_13443 hypothetical protein 47415 47615 1
CDS - ZP_01303782.1 SKA58_13448 colicin V production protein, hypothetical 47620 48138 -1
CDS - ZP_01303783.1 SKA58_13453 DNA repair protein RadA 48150 49517 -1
CDS - ZP_01303784.1 SKA58_13458 metal-dependent hydrolase 49605 50303 1
CDS - ZP_01303785.1 SKA58_13463 hypothetical protein 50373 52706 1
CDS - ZP_01303786.1 SKA58_13468 hypothetical protein 52736 53239 1
CDS - ZP_01303787.1 SKA58_13473 pterin-4-alpha-carbinolamine dehydratase 53240 53530 -1
CDS - ZP_01303788.1 SKA58_13478 hypothetical protein 53572 53979 1
CDS - ZP_01303789.1 SKA58_13483 ABC-type transport system ATPase component 53976 54575 1
CDS - ZP_01303790.1 SKA58_13488 cytochrome c-type biogenesis protein CcmB 54572 55219 1
CDS - ZP_01303791.1 SKA58_13493 4Fe-4S ferredoxin, iron-sulfur binding protein 55335 55673 1
CDS - ZP_01303792.1 SKA58_13498 transcriptional regulator, CarD family protein 55911 56438 1
CDS - ZP_01303793.1 SKA58_13503 hypothetical protein 56526 56780 -1
CDS - ZP_01303794.1 SKA58_13508 hypothetical protein 56860 57210 -1
CDS - ZP_01303795.1 SKA58_13513 asparaginase 57309 57821 -1
CDS - ZP_01303796.1 SKA58_13518 pyrroline-5-carboxylate reductase 57885 58697 -1
CDS - ZP_01303797.1 SKA58_13523 hypothetical protein 58701 59207 -1
CDS - ZP_01303798.1 SKA58_13528 hypothetical protein 59248 59592 -1
CDS - ZP_01303799.1 SKA58_13533 TspO and MBR like proteins 59631 60182 -1
CDS - ZP_01303800.1 SKA58_13538 RND superfamily protein 60210 63308 -1
CDS - ZP_01303801.1 SKA58_13543 HlyD family secretion protein 63321 64370 -1
CDS - ZP_01303802.1 SKA58_13548 hemolysin A 64467 65204 -1
CDS - ZP_01303803.1 SKA58_13553 cytochrome c biogenesis protein, transmembrane region 65204 67231 -1
CDS - ZP_01303804.1 SKA58_13558 type I phosphodiesterase/nucleotide pyrophosphatase 67309 68970 1
CDS - ZP_01303805.1 SKA58_13563 periplasmic sensor signal transduction histidine kinase 68987 70306 -1
CDS - ZP_01303806.1 SKA58_13568 two component transcriptional regulator, winged helix family protein 70315 71025 -1
CDS - ZP_01303807.1 SKA58_13573 hypothetical protein 71022 71117 -1
CDS - ZP_01303808.1 SKA58_13578 hypothetical protein 71193 72026 -1
CDS - ZP_01303809.1 SKA58_13583 sulphate transporter 72281 73777 -1
CDS - ZP_01303810.1 SKA58_13588 Carbonate dehydratase 73781 74479 -1
CDS - ZP_01303811.1 SKA58_13593 two component transcriptional regulator, winged helix family protein 74602 75309 -1
CDS - ZP_01303812.1 SKA58_13598 hypothetical protein 75432 75968 -1
CDS - ZP_01303813.1 SKA58_13603 magnesium and cobalt transport protein CorA, putative 76173 77141 1
CDS - ZP_01303814.1 SKA58_13608 oligogalacturonate lyase 77208 78509 1
CDS - ZP_01303815.1 SKA58_13613 hypothetical protein 78567 79445 1
CDS - ZP_01303816.1 SKA58_13618 oxidoreductase 79512 80249 -1
CDS - ZP_01303817.1 SKA58_13623 probable transcriptional regulator 80348 80782 1
CDS - ZP_01303818.1 SKA58_13628 hypothetical protein 80788 81639 -1
CDS - ZP_01303819.1 SKA58_13633 2-nitropropane dioxygenase, NPD 81855 82787 -1
CDS - ZP_01303820.1 SKA58_13638 aspartokinase 82995 84260 -1
CDS - ZP_01303821.1 SKA58_13643 ubiquinone biosynthesis O-methyltransferase 84469 85215 1
CDS - ZP_01303822.1 SKA58_13648 FAD dependent oxidoreductase 85216 86319 -1
CDS - ZP_01303823.1 SKA58_13653 lysophospholipase L2 86316 87281 -1
CDS - ZP_01303824.1 SKA58_13658 type IV prepilin peptidase, cpaA 87324 87797 1
CDS - ZP_01303825.1 SKA58_13663 Flp pilus assembly CpaB 87849 88862 1
CDS - ZP_01303826.1 SKA58_13668 type II and III secretion system protein 88873 90333 1
CDS - ZP_01303827.1 SKA58_13673 hypothetical protein 90350 90997 1
CDS - ZP_01303828.1 SKA58_13678 response regulator receiver domain protein (CheY-like) 90999 92273 1
CDS - ZP_01303829.1 SKA58_13683 hypothetical protein 92326 93324 1
CDS - ZP_01303830.1 SKA58_13688 type II secretion system protein 93342 94331 1