Treponema pallidum subsp. pallidum str. Nichols

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve TP0003 nucleotide sequence in FASTA format

Retrieve TP0003 protein sequence in FASTA format

Retrieve TP0003 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using TP0003 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Treponema Treponema pallidum Treponema pallidum subsp. pallidum )

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