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Vibrio cholera CIRS 101, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VCH_rna020 23S ribosomal RNA 1 712 1
rRNA - - VCH_rna021 5S ribosomal RNA 841 960 1
tRNA - - VCH_rna022 tRNA-Ser 1006 1096 1
CDS - ZP_05417934.1 VCH_000277 HTH-type transcriptional regulator IlvY 1207 2103 -1
CDS - ZP_05417935.1 VCH_000278 ketol-acid reductoisomerase 2241 3725 1
CDS - ZP_05417936.1 VCH_000279 putative cytoplasmic protein 3852 4103 -1
CDS - ZP_05417937.1 VCH_000280 RND multidrug efflux transporter 4219 7329 -1
CDS - ZP_05417938.1 VCH_000281 probable RND efflux membrane fusion protein 7341 8447 -1
CDS - ZP_05417939.1 VCH_000282 transcriptional regulator TetR family 8466 9035 -1
CDS - ZP_05417940.1 VCH_000283 ATP-dependent DNA helicase Rep 9208 11223 1
CDS - ZP_05417941.1 VCH_000284 cytochrome c5 11290 11697 -1
tRNA - - VCH_rna023 tRNA-Arg 11987 12063 1
tRNA - - VCH_rna024 tRNA-His 12099 12174 1
tRNA - - VCH_rna025 tRNA-Pro 12233 12309 1
CDS - ZP_05417942.1 VCH_000285 peptide ABC transporter ATP-binding protein 13045 14760 1
CDS - ZP_05417943.1 VCH_000286 peptide ABC transporter peptide-binding protein 14852 16408 1
CDS - ZP_05417944.1 VCH_000287 peptide ABC transporter permease component 16563 17540 1
CDS - ZP_05417945.1 VCH_000288 peptide ABC transporter permease component 17543 18481 1
CDS - ZP_05417946.1 VCH_000289 hypothetical protein 18656 19603 1
CDS - ZP_05417947.1 VCH_000290 deoxycytidylate deaminase-related protein 19856 21445 -1
CDS - ZP_05417948.1 VCH_000291 patatin-related protein 23850 24917 1
CDS - ZP_05417949.1 VCH_000292 hypothetical protein 24937 26241 1
CDS - ZP_05417950.1 VCH_000293 hypothetical protein 26244 27998 1
CDS - ZP_05417951.1 VCH_000294 hypothetical protein 28469 28627 -1
CDS - ZP_05417952.1 VCH_000295 phage Integrase 28872 30983 -1
CDS - ZP_05417953.1 VCH_000296 hypothetical protein 30993 32681 -1
CDS - ZP_05417954.1 VCH_000297 transposase putative 32678 33880 -1
CDS - ZP_05417955.1 VCH_000298 glutathione reductase 33969 35321 -1
CDS - ZP_05417956.1 VCH_000302 ATP-dependent DNA helicase UvrD/PcrA 38727 40898 1
CDS - ZP_05417957.1 VCH_000303 hypothetical protein 41572 41688 -1
CDS - ZP_05417958.1 VCH_000304 threonine efflux protein 41643 42311 -1
CDS - ZP_05417959.1 VCH_000305 transcriptional regulator AraC/XylS family 42386 43189 -1
CDS - ZP_05417960.1 VCH_000306 gamma-glutamyltranspeptidase 43346 45100 -1
CDS - ZP_05417961.1 VCH_000307 RarD protein 45274 46116 -1
CDS - ZP_05417962.1 VCH_000308 hypothetical protein 46115 46234 1
CDS - ZP_05417963.1 VCH_000309 ATP-dependent DNA helicase RecQ 46316 48178 1
CDS - ZP_05417964.1 VCH_000310 aminopeptidase N 48171 48470 1
CDS - ZP_05417965.1 VCH_000311 putative membrane protein 48641 49003 1
CDS - ZP_05417966.1 VCH_000312 putative hemolysin secretion ATP-binding protein 49039 50868 -1
CDS - ZP_05417967.1 VCH_000313 ferrichrome-iron receptor 51003 53102 1
CDS - ZP_05417968.1 VCH_000314 ferrichrome transport ATP-binding protein FhuC 53233 54018 1
CDS - ZP_05417969.1 VCH_000316 ferrichrome transport system permease protein FhuB 54965 56926 1
CDS - ZP_05417970.1 VCH_000317 transcriptional regulator RpiR family 56953 57801 -1
CDS - ZP_05417971.1 VCH_000318 N-acetylmuramic acid 6-phosphate etherase 58032 58934 1
CDS - ZP_05417972.1 VCH_000319 PTS system N-acetylmuramic acid-specific IIB component/PTS system N-acetylmuramic acid-specific IIC component 58965 60410 1
CDS - ZP_05417973.1 VCH_000320 hypothetical protein 60517 61005 -1
CDS - ZP_05417974.1 VCH_000321 protein YicC 61071 61937 -1
CDS - ZP_05417975.1 VCH_000322 ribonuclease PH 62101 62817 1
CDS - ZP_05417976.1 VCH_000323 orotate phosphoribosyltransferase 63183 63824 1
CDS - ZP_05417977.1 VCH_000324 lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase 63910 64887 -1
CDS - ZP_05417978.1 VCH_000325 lipid A biosynthesis lauroyl acyltransferase 64898 65845 -1
CDS - ZP_05417979.1 VCH_000326 HTH-type transcriptional regulator ttk 65851 66441 -1
CDS - ZP_05417980.1 VCH_000327 lipid A biosynthesis lauroyl acyltransferase 66397 66534 1
CDS - ZP_05417981.1 VCH_000328 phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase 66600 67799 -1
CDS - ZP_05417982.1 VCH_000329 methyl-accepting chemotaxis protein 67982 69661 1
CDS - ZP_05417983.1 VCH_000330 DNA repair protein RadC 69773 70447 1
CDS - ZP_05417984.1 VCH_000331 LSU ribosomal protein L28p 70742 70978 1
CDS - ZP_05417985.1 VCH_000332 LSU ribosomal protein L33p 70992 71159 1
CDS - ZP_05417986.1 VCH_000333 hypothetical protein 71386 71868 1
CDS - ZP_05417987.1 VCH_000334 formamidopyrimidine-DNA glycosylase 71878 72687 1
CDS - ZP_05417988.1 VCH_000335 phosphopantetheine adenylyltransferase 72784 73278 -1
CDS - ZP_05417989.1 VCH_000336 ADP-heptose--lipooligosaccharide heptosyltransferase II 73389 74426 1
CDS - ZP_05417990.1 VCH_000337 lipopolysaccharide biosynthesis glycosyltransferase 74488 75267 -1
CDS - ZP_05417991.1 VCH_000338 lipopolysaccharide heptosyltransferase I 75310 76377 -1
CDS - ZP_05417992.1 VCH_000339 hypothetical protein 76484 76612 -1
CDS - ZP_05417993.1 VCH_000340 3-deoxy-D-manno-octulosonic acid kinase 76667 77218 1
CDS - ZP_05417994.1 VCH_000341 lipopolysaccharide synthesis protein WavD 77222 78181 1
CDS - ZP_05417995.1 VCH_000342 lipopolysaccharide synthesis protein WavE 78185 79114 -1
CDS - ZP_05417996.1 VCH_000343 capsular polysaccharide biosynthesis protein 79111 79839 -1
CDS - ZP_05417997.1 VCH_000344 capsular polysaccharide biosynthesis protein 79851 81434 -1
CDS - ZP_05417998.1 VCH_000345 capsular polysaccharide biosynthesis protein putative 81425 81805 -1
CDS - ZP_05417999.1 VCH_000346 3-deoxy-D-manno-octulosonic-acid transferase 81802 83082 -1
CDS - ZP_05418000.1 VCH_000347 mannosyltransferase OCH1 and related enzymes 83082 83864 -1
CDS - ZP_05418001.1 VCH_000348 lipopolysaccharide biosynthesis protein putative 83867 84916 -1
CDS - ZP_05418002.1 VCH_000349 ADP-heptose--lipooligosaccharide heptosyltransferase II 84913 85950 -1
CDS - ZP_05418003.1 VCH_000350 O-antigen ligase 85950 87149 -1
CDS - ZP_05418004.1 VCH_000351 transferase hexapeptide repeat family 87151 87711 -1
CDS - ZP_05418005.1 VCH_000352 polysaccharide deacetylase 87725 89497 -1
CDS - ZP_05418006.1 VCH_000353 ADP-L-glycero-D-manno-heptose-6-epimerase 89656 90600 -1
CDS - ZP_05418007.1 VCH_000354 mannose-1-phosphate guanylyltransferase (GDP) 91153 92439 1
CDS - ZP_05418008.1 VCH_000355 phosphomannomutase 92442 93833 1
CDS - ZP_05418009.1 VCH_000356 GDP-mannose 4,6-dehydratase 93836 94957 1
CDS - ZP_05418010.1 VCH_000357 perosamine synthase 94968 96071 1
CDS - ZP_05418011.1 VCH_000358 O-antigen export system polymerase or transferase 96077 97459 1
CDS - ZP_05418012.1 VCH_000359 O-antigen export system permease protein 97431 98225 1
CDS - ZP_05418013.1 VCH_000360 O-antigen export system ATP-binding protein 98227 98979 1
CDS - ZP_05418014.1 VCH_000361 acyl carrier protein 99027 99260 1
CDS - ZP_05418015.1 VCH_000362 long-chain-fatty-acid--CoA ligase 99266 100681 1
CDS - ZP_05418016.1 VCH_000363 alcohol dehydrogenase 100690 101814 1
CDS - ZP_05418017.1 VCH_000364 acyl protein synthase/acyl-CoA reductase RfbN 101805 104282 1
CDS - ZP_05418018.1 VCH_000367 RfbT protein 106611 107471 1
CDS - ZP_05418019.1 VCH_000368 glycosyltransferase 107506 108618 -1
CDS - ZP_05418020.1 VCH_000369 nucleoside-diphosphate sugar epimerase/dehydratase 108626 110491 -1
CDS - ZP_05418021.1 VCH_000370 UDP-glucose 4-epimerase 110644 111615 1
CDS - ZP_05418022.1 VCH_000371 lipid carrier : UDP-N-acetylgalactosaminyltransferase 111623 112177 1
CDS - ZP_05418023.1 VCH_000372 hypothetical protein 112164 112280 1
CDS - ZP_05418024.1 VCH_000373 metallo-beta-lactamase family protein RNA-specific 112371 113687 1
CDS - ZP_05418025.1 VCH_000374 putative membrane protein 113949 115187 -1
CDS - ZP_05418026.1 VCH_000375 uracil-DNA glycosylase 115242 115814 -1
CDS - ZP_05418027.1 VCH_000377 mannose-6-phosphate isomerase 117761 118960 1