xBASE Logo
About | Contact | Home

Vibrio cholera CIRS 101, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
tRNA - - VCH_rna053 tRNA-Met 153 229 -1
tRNA - - VCH_rna054 tRNA-Gln 307 381 -1
tRNA - - VCH_rna055 tRNA-Leu 409 492 -1
tRNA - - VCH_rna056 tRNA-Leu 517 602 -1
tRNA - - VCH_rna057 tRNA-Met 631 707 -1
CDS - ZP_05419035.1 VCH_001425 GTP-binding and nucleic acid-binding protein YchF 985 2076 -1
CDS - ZP_05419036.1 VCH_001426 peptidyl-tRNA hydrolase 2087 2677 -1
CDS - ZP_05419037.1 VCH_001427 ribose-phosphate pyrophosphokinase 2846 3790 -1
CDS - ZP_05419038.1 VCH_001428 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3821 4693 -1
CDS - ZP_05419039.1 VCH_001429 outer membrane lipoprotein LolB precursor 4690 5307 -1
CDS - ZP_05419040.1 VCH_001430 glutamyl-tRNA reductase 5466 6725 1
CDS - ZP_05419041.1 VCH_001431 peptide chain release factor 1 6755 7843 1
CDS - ZP_05419042.1 VCH_001432 methylase of polypeptide chain release factors 7847 8707 1
CDS - ZP_05419043.1 VCH_001433 protein SirB2 8707 9090 1
CDS - ZP_05419044.1 VCH_001434 protein SirB1 9106 9918 1
CDS - ZP_05419045.1 VCH_001435 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase 9938 10789 1
CDS - ZP_05419046.1 VCH_001436 UDP-sugar hydrolase 11331 12992 1
CDS - ZP_05419047.1 VCH_001438 xanthine/uracil permease 13679 14932 -1
CDS - ZP_05419048.1 VCH_001439 hypothetical protein 15153 16301 1
CDS - ZP_05419049.1 VCH_001440 hypothetical protein 16508 16945 -1
CDS - ZP_05419050.1 VCH_001441 Trp repressor-binding protein 16948 17508 -1
CDS - ZP_05419051.1 VCH_001442 arsenate reductase 17505 17855 -1
CDS - ZP_05419052.1 VCH_001443 zinc metalloprotease 17878 19245 -1
CDS - ZP_05419053.1 VCH_001444 hypothetical protein 19516 19752 1
CDS - ZP_05419054.1 VCH_001445 permease PerM 19745 20809 1
CDS - ZP_05419055.1 VCH_001446 methyl-accepting chemotaxis protein 21000 22871 1
CDS - ZP_05419056.1 VCH_001447 thiol peroxidase Bcp-type 22973 23440 -1
CDS - ZP_05419057.1 VCH_001448 glycine cleavage system transcriptional antiactivator GcvR 23455 23997 -1
CDS - ZP_05419058.1 VCH_001449 dihydrodipicolinate synthase 24275 25153 1
CDS - ZP_05419059.1 VCH_001450 NlpB lipoprotein component of the protein assembly complex 25211 26230 1
CDS - ZP_05419060.1 VCH_001451 hypothetical protein 26323 26535 -1
CDS - ZP_05419061.1 VCH_001452 D,D-carboxypeptidase-related protein 26537 27211 -1
CDS - ZP_05419062.1 VCH_001453 N-succinyl-L,L-diaminopimelate desuccinylase 27214 28347 -1
CDS - ZP_05419063.1 VCH_001454 a glutathione-dependent thiol reductase 28378 28725 -1
CDS - ZP_05419064.1 VCH_001455 hypothetical protein 28976 29263 1
CDS - ZP_05419065.1 VCH_001456 hypothetical protein 29330 29686 -1
CDS - ZP_05419066.1 VCH_001457 membrane protein 29830 30294 1
CDS - ZP_05419067.1 VCH_001458 predicted iron-dependent peroxidase 30360 31268 1
CDS - ZP_05419068.1 VCH_001459 flagellin protein FlaF 31392 32528 1
CDS - ZP_05419069.1 VCH_001460 flagellin protein FlaD 32818 33951 1
CDS - ZP_05419070.1 VCH_001462 flagellin protein FlaG 35392 35853 1
CDS - ZP_05419071.1 VCH_001463 flagellar hook-associated protein FliD 35875 37875 1
CDS - ZP_05419072.1 VCH_001464 hypothetical protein 37877 38182 1
CDS - ZP_05419073.1 VCH_001465 flagellar biosynthesis protein FliS 38193 38603 1
CDS - ZP_05419074.1 VCH_001466 flagellar regulatory protein FleQ 38835 40301 1
CDS - ZP_05419075.1 VCH_001467 flagellar sensor histidine kinase FleS 40413 41468 1
CDS - ZP_05419076.1 VCH_001468 flagellar regulatory protein FleQ 41471 42904 1
CDS - ZP_05419077.1 VCH_001469 flagellar hook-basal body complex protein FliE 42980 43291 1
CDS - ZP_05419078.1 VCH_001471 flagellar motor switch protein FliG 45043 46089 1
CDS - ZP_05419079.1 VCH_001472 flagellar assembly protein FliH 46182 46982 1
CDS - ZP_05419080.1 VCH_001473 flagellum-specific ATP synthase FliI 46986 48305 1
CDS - ZP_05419081.1 VCH_001474 flagellar protein FliJ 48320 48763 1
CDS - ZP_05419082.1 VCH_001475 flagellar hook-length control protein FliK 48942 50951 1
CDS - ZP_05419083.1 VCH_001476 flagellar biosynthesis protein FliL 50986 51489 1
CDS - ZP_05419084.1 VCH_001477 flagellar motor switch protein FliM 51497 52546 1
CDS - ZP_05419085.1 VCH_001478 flagellar motor switch protein FliN 52617 53027 1
CDS - ZP_05419086.1 VCH_001479 flagellar biosynthesis protein FliO 53031 53420 1
CDS - ZP_05419087.1 VCH_001480 flagellar biosynthesis protein FliP 53398 54297 1
CDS - ZP_05419088.1 VCH_001481 flagellar biosynthesis protein FliQ 54310 54579 1
CDS - ZP_05419089.1 VCH_001482 flagellar biosynthesis protein FliR 54588 55370 1
CDS - ZP_05419090.1 VCH_001483 flagellar biosynthesis protein FlhB 55518 56510 1
CDS - ZP_05419091.1 VCH_001484 hypothetical protein 56518 57078 -1
CDS - ZP_05419092.1 VCH_001485 hypothetical adenine-specific methylase yfcB 57145 58077 1
CDS - ZP_05419093.1 VCH_001486 chorismate synthase 58307 59392 1
CDS - ZP_05419094.1 VCH_001487 hypothetical protein 59474 60097 -1
CDS - ZP_05419095.1 VCH_001488 putative transporting ATPase 60461 60991 1
CDS - ZP_05419096.1 VCH_001489 hypothetical protein 61030 61293 1
CDS - ZP_05419097.1 VCH_001490 NADPH-dependent FMN reductase 61501 62028 1
CDS - ZP_05419098.1 VCH_001491 5-methylaminomethyl-2-thiouridine-forming enzyme MnmC 62107 64122 -1
CDS - ZP_05419099.1 VCH_001492 3-oxoacyl-[acyl-carrier-protein] synthase KASI 64249 65460 1
CDS - ZP_05419100.1 VCH_001493 erythronate-4-phosphate dehydrogenase 65664 66809 1
CDS - ZP_05419101.1 VCH_001494 aspartate-semialdehyde dehydrogenase 66793 67806 1
CDS - ZP_05419102.1 VCH_001495 ferric uptake regulation protein FUR 67888 68340 -1
CDS - ZP_05419103.1 VCH_001496 hypothetical protein 68706 69206 1
CDS - ZP_05419104.1 VCH_001497 LysR family regulatory protein CidR 69210 70088 -1
CDS - ZP_05419105.1 VCH_001498 Holin-like protein CidA 70204 70644 1
CDS - ZP_05419106.1 VCH_001499 cidA-associated membrane protein CidB 70650 71339 1
CDS - ZP_05419107.1 VCH_001500 flavodoxin 1 71413 71940 -1
CDS - ZP_05419108.1 VCH_001501 hypothetical protein 71989 72210 -1
CDS - ZP_05419109.1 VCH_001502 putative esterase/lipase YbfF 72306 73079 -1
CDS - ZP_05419110.1 VCH_001503 SeqA protein 73172 73600 1
CDS - ZP_05419111.1 VCH_001504 phosphoglucomutase 73813 75459 1
CDS - ZP_05419112.1 VCH_001505 hypothetical protein 75509 76282 -1
CDS - ZP_05419113.1 VCH_001506 hypothetical protein 76347 77105 1
CDS - ZP_05419114.1 VCH_001507 citrate synthase (si) 77157 78446 -1
CDS - ZP_05419115.1 VCH_001508 succinate dehydrogenase cytochrome b-556 subunit 79022 79234 1
CDS - ZP_05419116.1 VCH_001509 succinate dehydrogenase hydrophobic membrane anchor protein 79228 79572 1
CDS - ZP_05419117.1 VCH_001510 succinate dehydrogenase flavoprotein subunit 79573 81339 1
CDS - ZP_05419118.1 VCH_001511 succinate dehydrogenase iron-sulfur protein 81354 82064 1
CDS - ZP_05419119.1 VCH_001512 2-oxoglutarate dehydrogenase E1 component 82153 84963 1
CDS - ZP_05419120.1 VCH_001513 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex 84992 86206 1
CDS - ZP_05419121.1 VCH_001514 succinyl-CoA ligase [ADP-forming] beta chain 86374 87540 1
CDS - ZP_05419122.1 VCH_001515 succinyl-CoA ligase [ADP-forming] alpha chain 87540 88412 1
CDS - ZP_05419123.1 VCH_001516 zinc ABC transporter permease protein ZnuB 88519 89211 -1
CDS - ZP_05419124.1 VCH_001517 zinc ABC transporter ATP-binding protein ZnuC 89294 90082 -1
CDS - ZP_05419125.1 VCH_001518 zinc ABC transporter-binding protein ZnuA 90166 91050 1
CDS - ZP_05419126.1 VCH_001519 signal transduction histidine kinase 91253 94597 1
CDS - ZP_05419127.1 VCH_001520 ferrous iron transport protein A 95384 95599 1
CDS - ZP_05419128.1 VCH_001521 ferrous iron transport protein B 95596 97872 1
CDS - ZP_05419129.1 VCH_001522 ferrous iron transport protein C 97869 98099 1