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Vibrio cholera CIRS 101, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VCH_rna072 16S ribosomal RNA 125 1660 1
tRNA - - VCH_rna073 tRNA-Glu 1729 1804 1
rRNA - - VCH_rna074 23S ribosomal RNA 2092 4979 1
rRNA - - VCH_rna075 5S ribosomal RNA 5107 5226 1
tRNA - - VCH_rna076 tRNA-Thr 5273 5348 1
rRNA - - VCH_rna077 5S ribosomal RNA 5389 5508 1
CDS - ZP_05420783.1 VCH_003235 hypothetical protein 5565 6356 -1
CDS - ZP_05420784.1 VCH_003236 3-isopropylmalate dehydratase small subunit 6457 7059 -1
CDS - ZP_05420785.1 VCH_003237 3-isopropylmalate dehydratase large subunit 7075 8478 -1
CDS - ZP_05420786.1 VCH_003238 3-isopropylmalate dehydrogenase 8536 9627 -1
CDS - ZP_05420787.1 VCH_003239 2-isopropylmalate synthase 9739 11289 -1
CDS - ZP_05420788.1 VCH_003240 transcriptional regulator TetR family 11672 12307 1
CDS - ZP_05420789.1 VCH_003241 membrane-associated phospholipid phosphatase 12437 12970 1
CDS - ZP_05420790.1 VCH_003242 glycosyltransferase 12967 14055 1
CDS - ZP_05420791.1 VCH_003243 transcriptional regulator LysR family 14361 15320 1
CDS - ZP_05420792.1 VCH_003244 long-chain-fatty-acid--CoA ligase 15497 17302 1
CDS - ZP_05420793.1 VCH_003245 acetolactate synthase large subunit 17787 19508 1
CDS - ZP_05420794.1 VCH_003246 acetolactate synthase small subunit 19510 20004 1
CDS - ZP_05420795.1 VCH_003247 D-3-phosphoglycerate dehydrogenase 20236 21465 -1
CDS - ZP_05420796.1 VCH_003248 ribose 5-phosphate isomerase A 21719 22375 -1
CDS - ZP_05420797.1 VCH_003249 5-formyltetrahydrofolate cyclo-ligase 22485 23069 -1
CDS - ZP_05420798.1 VCH_003250 Z-ring-associated protein ZapA 23269 23577 -1
CDS - ZP_05420799.1 VCH_003251 hypothetical protein 23819 24394 1
CDS - ZP_05420800.1 VCH_003252 2-octaprenyl-6-methoxyphenol hydroxylase 24415 25623 1
CDS - ZP_05420801.1 VCH_003253 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 25635 26864 1
CDS - ZP_05420802.1 VCH_003254 hypothetical protein 26965 27171 -1
CDS - ZP_05420803.1 VCH_003255 predicted aminomethyltransferase related to GcvT 27805 28776 -1
CDS - ZP_05420804.1 VCH_003256 hypothetical protein 28929 29189 1
CDS - ZP_05420805.1 VCH_003257 hypothetical protein 29221 29583 1
CDS - ZP_05420806.1 VCH_003258 L-aspartate oxidase 29608 31260 -1
CDS - ZP_05420807.1 VCH_003259 RNA polymerase sigma factor RpoE 31720 32292 1
CDS - ZP_05420808.1 VCH_003260 sigma factor RpoE negative regulatory protein RseA 32324 32944 1
CDS - ZP_05420809.1 VCH_003261 sigma factor RpoE negative regulatory protein RseB precursor 32941 33906 1
CDS - ZP_05420810.1 VCH_003262 sigma factor RpoE regulatory protein RseC 33903 34373 1
CDS - ZP_05420811.1 VCH_003263 translation elongation factor LepA 34486 36279 1
CDS - ZP_05420812.1 VCH_003264 signal peptidase I 36371 37267 1
CDS - ZP_05420813.1 VCH_003265 ribonuclease III 37311 37976 1
CDS - ZP_05420814.1 VCH_003266 GTP-binding protein Era 37969 38946 1
CDS - ZP_05420815.1 VCH_003267 DNA recombination and repair protein RecO 39016 39741 1
CDS - ZP_05420816.1 VCH_003268 pyridoxine 5'-phosphate synthase 39738 40469 1
CDS - ZP_05420817.1 VCH_003269 holo-[acyl-carrier protein] synthase 40473 40853 1
CDS - ZP_05420818.1 VCH_003270 hypothetical protein 41140 42393 1
CDS - ZP_05420819.1 VCH_003271 hypothetical protein 42496 42813 1
CDS - ZP_05420820.1 VCH_003272 GGDEF domain protein 42806 44098 1
CDS - ZP_05420821.1 VCH_003273 BarA sensory histidine kinase 44086 46836 -1
CDS - ZP_05420822.1 VCH_003274 23S rRNA (Uracil-5-)-methyltransferase rumA 47041 48363 1
CDS - ZP_05420823.1 VCH_003275 GTP pyrophosphokinase (p)ppGpp synthetase I 48427 50643 1
CDS - ZP_05420824.1 VCH_003276 nucleoside triphosphate pyrophosphohydrolase MazG 50743 51558 1
CDS - ZP_05420825.1 VCH_003277 CTP synthase 51833 53470 1
CDS - ZP_05420826.1 VCH_003278 enolase 53549 54850 1
CDS - ZP_05420827.1 VCH_003279 tRNA nucleotidyltransferase 54952 56163 -1
CDS - ZP_05420828.1 VCH_003280 general secretion pathway protein A 56256 57845 1
CDS - ZP_05420829.1 VCH_003281 general secretion pathway protein B 57845 58615 1
CDS - ZP_05420830.1 VCH_003282 arylsulfatase 58707 59315 -1
CDS - ZP_05420831.1 VCH_003283 probable low-affinity inorganic phosphate transporter 59482 60744 -1
CDS - ZP_05420832.1 VCH_003284 phosphate transport regulator 60887 61567 -1
CDS - ZP_05420833.1 VCH_003285 adenylate cyclase 61773 63290 1
CDS - ZP_05420834.1 VCH_003286 methyl-accepting chemotaxis protein 63775 65031 1
CDS - ZP_05420835.1 VCH_003287 glutamate-ammonia-ligase adenylyltransferase 65155 68001 1
CDS - ZP_05420836.1 VCH_003288 ADP-heptose synthase/D-glycero-beta-D-manno-heptose 7-phosphate kinase 68065 69495 1
CDS - ZP_05420837.1 VCH_003289 type I secretion TolC precursor 69601 70917 -1
CDS - ZP_05420838.1 VCH_003290 ADP-ribose pyrophosphatase 71149 71775 1
CDS - ZP_05420839.1 VCH_003291 putative cytoplasmic protein 71791 72228 1
CDS - ZP_05420840.1 VCH_003292 3',5'-cyclic-nucleotide phosphodiesterase 72316 73071 1
CDS - ZP_05420841.1 VCH_003293 putative esterase 73073 73660 1
CDS - ZP_05420842.1 VCH_003294 topoisomerase IV subunit B 74061 75869 1
CDS - ZP_05420843.1 VCH_003295 topoisomerase IV subunit A 75873 78158 1
CDS - ZP_05420844.1 VCH_003296 hypothetical protein 78208 78405 -1
CDS - ZP_05420845.1 VCH_003297 hypothetical protein 78431 78550 1
CDS - ZP_05420846.1 VCH_003298 hypothetical protein 78547 79287 -1
CDS - ZP_05420847.1 VCH_003299 dephospho-CoA kinase 79319 79927 -1
CDS - ZP_05420848.1 VCH_003300 leader peptidase (Prepilin peptidase)/N-methyltransferase 79924 80799 -1
CDS - ZP_05420849.1 VCH_003301 type 4 fimbrial assembly protein PilC 80857 82083 -1
CDS - ZP_05420850.1 VCH_003302 type 4 fimbrial assembly ATPase PilB 82126 83814 -1
CDS - ZP_05420851.1 VCH_003303 type IV pilin PilA 83814 84275 -1
CDS - ZP_05420852.1 VCH_003304 quinolinate phosphoribosyltransferase [decarboxylating] 84520 85410 -1
CDS - ZP_05420853.1 VCH_003305 AmpD protein 85706 86251 1
CDS - ZP_05420854.1 VCH_003306 flavodoxin 2 86529 87047 -1
CDS - ZP_05420855.1 VCH_003307 site-specific recombinase XerD 87185 88093 1
CDS - ZP_05420856.1 VCH_003308 thiol:disulfide interchange protein DsbC 88110 88862 1
CDS - ZP_05420857.1 VCH_003309 single-stranded-DNA-specific exonuclease RecJ 89023 90660 1
CDS - ZP_05420858.1 VCH_003310 5'-nucleotidase 90705 92609 -1
CDS - ZP_05420859.1 VCH_003311 transcriptional repressor for pyruvate dehydrogenase complex 93093 93863 1
CDS - ZP_05420860.1 VCH_003312 pyruvate dehydrogenase E1 component 93913 96573 1
CDS - ZP_05420861.1 VCH_003313 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 96592 98481 1
CDS - ZP_05420862.1 VCH_003314 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex 98749 100176 1
CDS - ZP_05420863.1 VCH_003315 S-adenosyl-methyltransferase MraW 100934 101884 1
CDS - ZP_05420864.1 VCH_003316 hypothetical protein 101894 102214 1
CDS - ZP_05420865.1 VCH_003317 cell division protein FtsI [Peptidoglycan synthetase] 102211 103953 1
CDS - ZP_05420866.1 VCH_003318 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 103970 105457 1
CDS - ZP_05420867.1 VCH_003319 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase 105454 106815 1
CDS - ZP_05420868.1 VCH_003320 phospho-N-acetylmuramoyl-pentapeptide- transferase 106812 107894 1
CDS - ZP_05420869.1 VCH_003321 UDP-N-acetylmuramoylalanine--D-glutamate ligase 107918 109240 1
CDS - ZP_05420870.1 VCH_003322 cell division protein FtsW 109257 110453 1
CDS - ZP_05420871.1 VCH_003323 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 110461 111501 1
CDS - ZP_05420872.1 VCH_003325 cell division protein FtsQ 113157 113939 1
CDS - ZP_05420873.1 VCH_003326 cell division protein FtsA 113932 115194 1
CDS - ZP_05420874.1 VCH_003327 cell division protein FtsZ 115225 116421 1
CDS - ZP_05420875.1 VCH_003328 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 116519 117436 1
CDS - ZP_05420876.1 VCH_003329 hypothetical protein 117541 118014 -1