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Vibrio cholerae BX 330286, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_04396351.1 VCF_002067 translation elongation factor G 516 2612 -1
CDS - ZP_04396352.1 VCF_002068 SSU ribosomal protein S7p (S5e) 2688 3158 -1
CDS - ZP_04396353.1 VCF_002069 SSU ribosomal protein S12p (S23e) 3274 3648 -1
CDS - ZP_04396354.1 VCF_002070 hypothetical protein 3833 4108 -1
CDS - ZP_04396355.1 VCF_002071 tRNA 5-methylaminomethyl-2-thiouridine synthase TusC 4118 4474 -1
CDS - ZP_04396356.1 VCF_002072 tRNA 5-methylaminomethyl-2-thiouridine synthase TusD 4471 4866 -1
CDS - ZP_04396357.1 VCF_002073 hypothetical protein 4863 5585 -1
CDS - ZP_04396358.1 VCF_002074 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor 5784 6563 -1
CDS - ZP_04396359.1 VCF_002075 hypothetical protein 6748 7683 1
CDS - ZP_04396360.1 VCF_002076 protein SlyX 7665 7913 1
CDS - ZP_04396361.1 VCF_002077 protein YjeT 7954 8160 -1
CDS - ZP_04396362.1 VCF_002078 HflC protein 8203 9183 -1
CDS - ZP_04396363.1 VCF_002079 HflK protein 9186 10373 -1
CDS - ZP_04396364.1 VCF_002080 GTP-binding protein HflX 10419 11708 -1
CDS - ZP_04396365.1 VCF_002081 RNA-binding protein Hfq 11741 12004 -1
CDS - ZP_04396366.1 VCF_002082 tRNA delta(2)-isopentenylpyrophosphate transferase 12176 13330 -1
CDS - ZP_04396367.1 VCF_002083 DNA mismatch repair protein MutL 13120 15081 -1
CDS - ZP_04396368.1 VCF_002084 N-acetylmuramoyl-L-alanine amidase AmiB precursor 15088 16806 -1
CDS - ZP_04396369.1 VCF_002085 ATPase YjeE 16800 17264 -1
CDS - ZP_04396370.1 VCF_002086 iron-sulfur cluster-binding protein 17469 18578 1
tRNA - - VCF_rna022 tRNA-Met 19148 19224 -1
tRNA - - VCF_rna023 tRNA-Met 19267 19343 -1
tRNA - - VCF_rna024 tRNA-Met 19386 19462 -1
tRNA - - VCF_rna025 tRNA-Gly 19649 19724 -1
tRNA - - VCF_rna026 tRNA-Met 19759 19835 -1
tRNA - - VCF_rna027 tRNA-Gly 19875 19950 -1
tRNA - - VCF_rna028 tRNA-Gly 20107 20182 -1
tRNA - - VCF_rna029 tRNA-Gly 20217 20292 -1
CDS - ZP_04396371.1 VCF_002087 oligoribonuclease 20451 20996 -1
CDS - ZP_04396372.1 VCF_002088 ribosome small subunit-stimulated GTPase EngC 21119 22180 1
CDS - ZP_04396373.1 VCF_002089 hypothetical protein 22188 22283 1
CDS - ZP_04396374.1 VCF_002090 phosphatidylserine decarboxylase 22276 23133 1
CDS - ZP_04396375.1 VCF_002091 transporter 23320 24756 1
CDS - ZP_04396376.1 VCF_002092 permease 24908 25795 1
CDS - ZP_04396377.1 VCF_002093 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 25938 27470 1
CDS - ZP_04396378.1 VCF_002094 membrane-bound metallopeptidase 27639 28787 1
CDS - ZP_04396379.1 VCF_002095 hypothetical protein 28784 29743 -1
CDS - ZP_04396380.1 VCF_002096 transcriptional reguator TetR family 29830 30522 -1
CDS - ZP_04396381.1 VCF_002097 uroporphyrinogen III decarboxylase 30564 31643 -1
CDS - ZP_04396382.1 VCF_002098 NADH pyrophosphatase 31886 32695 -1
CDS - ZP_04396383.1 VCF_002099 regulator of sigma D 32840 33334 1
CDS - ZP_04396384.1 VCF_002100 DNA-directed RNA polymerase beta' subunit 33445 37650 -1
CDS - ZP_04396385.1 VCF_002101 DNA-directed RNA polymerase beta subunit 37755 41780 -1
CDS - ZP_04396386.1 VCF_002102 LSU ribosomal protein L7/L12 (L23e) 42021 42386 -1
CDS - ZP_04396387.1 VCF_002103 LSU ribosomal protein L10p (P0) 42453 42941 -1
CDS - ZP_04396388.1 VCF_002104 LSU ribosomal protein L1p (L10Ae) 43211 43912 -1
CDS - ZP_04396389.1 VCF_002105 LSU ribosomal protein L11p (L12e) 43917 44345 -1
CDS - ZP_04396390.1 VCF_002106 transcription antitermination protein NusG 44476 45024 -1
CDS - ZP_04396391.1 VCF_002107 preprotein translocase subunit SecE 45040 45435 -1
CDS - ZP_04396392.1 VCF_002108 translation elongation factor Tu 45644 46879 -1
tRNA - - VCF_rna030 tRNA-Thr 46941 47016 -1
tRNA - - VCF_rna031 tRNA-Gly 47030 47104 -1
tRNA - - VCF_rna032 tRNA-Tyr 47140 47224 -1
tRNA - - VCF_rna033 tRNA-Thr 47260 47335 -1
CDS - ZP_04396393.1 VCF_002109 pantothenate kinase 47529 48467 1
CDS - ZP_04396394.1 VCF_002110 biotin-protein ligase/biotin operon repressor 48517 49479 -1
CDS - ZP_04396395.1 VCF_002111 UDP-N-acetylenolpyruvoylglucosamine reductase 49476 50549 -1
CDS - ZP_04396396.1 VCF_002112 hypothetical protein 50562 51008 1
CDS - ZP_04396397.1 VCF_002113 hypothetical protein 50980 51081 -1
CDS - ZP_04396398.1 VCF_002114 CDP-diacylglycerol--serine O-phosphatidyltransferase 51103 52443 1
tRNA - - VCF_rna034 tRNA-Asp 52728 52804 -1
rRNA - - VCF_rna035 5S ribosomal RNA 52828 52947 -1
rRNA - - VCF_rna036 23S ribosomal RNA 53075 55961 -1
tRNA - - VCF_rna037 tRNA-Ala 56248 56323 -1
rRNA - - VCF_rna038 16S ribosomal RNA 56386 57921 -1
CDS - ZP_04396399.1 VCF_002115 hypothetical protein 58107 58199 -1
CDS - ZP_04396400.1 VCF_002116 NAD(P)H-flavin reductase 58507 59217 -1
CDS - ZP_04396401.1 VCF_002117 ferredoxin 59233 59502 -1
CDS - ZP_04396402.1 VCF_002118 3-polyprenyl-4-hydroxybenzoate carboxy-lyase 59499 61388 -1
CDS - ZP_04396403.1 VCF_002119 hypothetical protein 61422 62414 -1
CDS - ZP_04396404.1 VCF_002120 transcription termination factor Rho 62513 63772 -1
CDS - ZP_04396405.1 VCF_002121 thioredoxin 63970 64296 -1
CDS - ZP_04396406.1 VCF_002122 ATP-dependent RNA helicase RhlB 64408 65724 1
CDS - ZP_04396407.1 VCF_002123 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 65663 67225 1
CDS - ZP_04396408.1 VCF_002124 sensor histidine kinase 67348 70791 -1
CDS - ZP_04396409.1 VCF_002125 hypothetical protein 70884 72074 -1
CDS - ZP_04396410.1 VCF_002126 hypothetical protein 72334 74157 1
CDS - ZP_04396411.1 VCF_002127 DNA polymerase III epsilon subunit 74166 74795 1
CDS - ZP_04396412.1 VCF_002128 acetyl-coenzyme A synthetase 74947 76947 1
CDS - ZP_04396413.1 VCF_002129 3-dehydroquinate dehydratase II 77327 77779 1
CDS - ZP_04396414.1 VCF_002130 biotin carboxyl carrier protein of acetyl-CoA carboxylase 77707 78297 1
CDS - ZP_04396415.1 VCF_002131 biotin carboxylase of acetyl-CoA carboxylase 78312 79655 1
CDS - ZP_04396416.1 VCF_002132 hypothetical protein 79767 79883 1
CDS - ZP_04396417.1 VCF_002133 ribosomal protein L11 methyltransferase 79864 80751 1
CDS - ZP_04396418.1 VCF_002134 hypothetical protein 80791 80883 1
CDS - ZP_04396419.1 VCF_002135 tRNA dihydrouridine synthase B 80891 81859 1
CDS - ZP_04396420.1 VCF_002136 NA-binding protein Fis 81883 82179 1
CDS - ZP_04396421.1 VCF_002137 gluconate utilization system Gnt-I transcriptional repressor 82317 83315 1
CDS - ZP_04396422.1 VCF_002138 hypothetical protein 83302 83394 1
CDS - ZP_04396423.1 VCF_002139 phosphogluconate dehydratase 83391 85223 -1
CDS - ZP_04396424.1 VCF_002140 gluconokinase 85184 85699 -1
CDS - ZP_04396425.1 VCF_002141 low-affinity gluconate/H+ symporter GntU 85853 87229 1
CDS - ZP_04396426.1 VCF_002142 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase 87242 87847 1
CDS - ZP_04396427.1 VCF_002143 ferrichrome-iron receptor 88070 90112 1
CDS - ZP_04396428.1 VCF_002144 hypothetical protein 90133 90810 1
CDS - ZP_04396429.1 VCF_002145 methyl-accepting chemotaxis protein 91045 92715 1
CDS - ZP_04396430.1 VCF_002146 lysine decarboxylase 92833 95034 -1
CDS - ZP_04396431.1 VCF_002147 lysine/cadaverine antiporter membrane protein CadB 95078 96415 -1
CDS - ZP_04396432.1 VCF_002148 transcriptional activator of cad operon 97115 98674 -1
CDS - ZP_04396433.1 VCF_002149 transcriptional regulator MerR family 98901 99302 -1