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Vibrio cholerae BX 330286, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VCF_rna051 16S ribosomal RNA 53 1588 1
tRNA - - VCF_rna052 tRNA-Glu 1657 1732 1
tRNA - - VCF_rna053 tRNA-Lys 1752 1826 1
tRNA - - VCF_rna054 tRNA-Val 1857 1932 1
CDS - ZP_04396534.1 VCF_002250 hypothetical protein 1937 2077 -1
rRNA - - VCF_rna055 23S ribosomal RNA 2275 5161 1
rRNA - - VCF_rna056 5S ribosomal RNA 5289 5408 1
tRNA - - VCF_rna057 tRNA-Asp 5432 5508 1
CDS - ZP_04396535.1 VCF_002251 hypothetical protein 5983 7317 -1
CDS - ZP_04396536.1 VCF_002252 5-methyltetrahydrofolate--homocysteine methyltransferase 7514 11194 1
CDS - ZP_04396537.1 VCF_002253 aspartokinase 11267 12622 -1
CDS - ZP_04396538.1 VCF_002254 serine--pyruvate aminotransferase/L-alanine:glyoxylate aminotransferase 13086 14204 1
CDS - ZP_04396539.1 VCF_002255 lipid A core-O-antigen ligase 14283 16076 -1
CDS - ZP_04396540.1 VCF_002256 excinuclease ABC subunit A 16132 18954 -1
CDS - ZP_04396541.1 VCF_002257 UTP--glucose-1-phosphate uridylyltransferase 19110 19985 -1
CDS - ZP_04396542.1 VCF_002258 hypothetical protein 20155 20799 -1
CDS - ZP_04396543.1 VCF_002259 single-stranded DNA-binding protein 21073 21624 1
CDS - ZP_04396544.1 VCF_002260 MSHA biogenesis protein MshH 21739 23760 1
CDS - ZP_04396545.1 VCF_002261 MSHA biogenesis protein MshI 23773 25212 1
CDS - ZP_04396546.1 VCF_002262 MSHA biogenesis protein MshJ 25209 25859 1
CDS - ZP_04396547.1 VCF_002263 MSHA biogenesis protein MshK 25852 26169 1
CDS - ZP_04396548.1 VCF_002264 MSHA biogenesis protein MshL 26184 27863 1
CDS - ZP_04396549.1 VCF_002265 MSHA biogenesis protein MshM 27868 28713 1
CDS - ZP_04396550.1 VCF_002266 MSHA biogenesis protein MshN 28692 29861 1
CDS - ZP_04396551.1 VCF_002267 MSHA biogenesis protein MshE 29851 31578 1
CDS - ZP_04396552.1 VCF_002268 MSHA biogenesis protein MshG 31587 32810 1
CDS - ZP_04396553.1 VCF_002269 MSHA biogenesis protein MshF 32780 33265 1
CDS - ZP_04396554.1 VCF_002270 MSHA pilin protein MshB 33310 33900 1
CDS - ZP_04396555.1 VCF_002271 MSHA pilin protein MshA 33926 34462 1
CDS - ZP_04396556.1 VCF_002272 MSHA pilin protein MshC 34499 34987 1
CDS - ZP_04396557.1 VCF_002273 MSHA pilin protein MshD 34935 35546 1
CDS - ZP_04396558.1 VCF_002274 MSHA biogenesis protein MshO 35546 36316 1
CDS - ZP_04396559.1 VCF_002275 MSHA biogenesis protein MshP 36282 36713 1
CDS - ZP_04396560.1 VCF_002276 MSHA biogenesis protein MshQ 37174 40464 1
CDS - ZP_04396561.1 VCF_002277 rod shape-determining protein MreB 40632 41675 1
CDS - ZP_04396562.1 VCF_002278 rod shape-determining protein MreC 41732 42622 1
CDS - ZP_04396563.1 VCF_002279 rod shape-determining protein MreD 42609 43097 1
CDS - ZP_04396564.1 VCF_002280 septum formation protein Maf 43082 43657 1
CDS - ZP_04396565.1 VCF_002281 cytoplasmic axial filament protein CafA and Ribonuclease G 43683 45152 1
CDS - ZP_04396566.1 VCF_002282 hypothetical protein 45201 49040 1
CDS - ZP_04396567.1 VCF_002283 hypothetical protein 49049 49876 1
CDS - ZP_04396568.1 VCF_002284 TldD protein probably a protease 49876 51321 1
CDS - ZP_04396569.1 VCF_002285 arginine deiminase 51417 52640 -1
CDS - ZP_04396570.1 VCF_002286 hypothetical protein 53367 53789 1
CDS - ZP_04396571.1 VCF_002287 beta-galactosidase/beta-glucuronidase 53936 54733 1
CDS - ZP_04396572.1 VCF_002288 hypothetical protein 54802 55185 -1
CDS - ZP_04396573.1 VCF_002289 universal stress protein family 3 55336 55773 -1
CDS - ZP_04396574.1 VCF_002290 TRAP-type uncharacterized transport system fused permease component 55895 58459 -1
CDS - ZP_04396575.1 VCF_002291 TRAP transporter solute receptor TAXI family precursor 58630 59616 -1
CDS - ZP_04396576.1 VCF_002292 arginine pathway regulatory protein ArgR repressor of arg regulon 59922 60455 -1
CDS - ZP_04396577.1 VCF_002293 malate dehydrogenase 60720 61655 1
CDS - ZP_04396578.1 VCF_002294 arginine/ornithine antiporter ArcD 62129 63535 1
CDS - ZP_04396579.1 VCF_002295 octaprenyl-diphosphate synthase/dimethylallyltransferase/geranyltranstransferase/ geranylgeranyl pyrophosphate synthetase 63684 64655 -1
CDS - ZP_04396580.1 VCF_002296 LSU ribosomal protein L21p 64926 65237 1
CDS - ZP_04396581.1 VCF_002297 LSU ribosomal protein L27p 65258 65518 1
CDS - ZP_04396582.1 VCF_002298 GTP-binding protein Obg 65719 66906 1
CDS - ZP_04396583.1 VCF_002299 hypothetical protein 66920 67789 1
CDS - ZP_04396584.1 VCF_002300 hypothetical protein 67777 68262 1
CDS - ZP_04396585.1 VCF_002301 dihydrofolate reductase 68275 68772 1
CDS - ZP_04396586.1 VCF_002302 bis(5'-nucleosyl)-tetraphosphatase symmetrical 68921 69730 -1
CDS - ZP_04396587.1 VCF_002303 ApaG protein 69741 70121 -1
CDS - ZP_04396588.1 VCF_002304 dimethyladenosine transferase 70193 71008 -1
CDS - ZP_04396589.1 VCF_002305 4-hydroxythreonine-4-phosphate dehydrogenase 71022 72014 -1
CDS - ZP_04396590.1 VCF_002306 peptidyl-prolyl cis-trans isomerase SurA 72004 73299 -1
CDS - ZP_04396591.1 VCF_002307 Imp required for envelope biogenesis/organic solvent tolerance protein precursor 73352 75715 -1
CDS - ZP_04396592.1 VCF_002308 hypothetical protein 75862 76716 1
tRNA - - VCF_rna058 tRNA-Asn 76871 76946 -1
tRNA - - VCF_rna059 tRNA-Thr 76961 77036 -1
tRNA - - VCF_rna060 tRNA-Phe 77078 77153 -1
CDS - ZP_04396593.1 VCF_002309 N-acetylglucosamine regulated methyl-accepting chemotaxis protein 77568 79193 -1
tRNA - - VCF_rna061 tRNA-Asn 79449 79524 -1
tRNA - - VCF_rna062 tRNA-Phe 79562 79637 -1
tRNA - - VCF_rna063 tRNA-Thr 79648 79723 -1
tRNA - - VCF_rna064 tRNA-Phe 79772 79847 -1
CDS - ZP_04396594.1 VCF_002310 membrane-bound lytic murein transglycosylase C precursor 79957 81147 -1
CDS - ZP_04396595.1 VCF_002311 hypothetical protein 81186 81458 -1
CDS - ZP_04396596.1 VCF_002312 A/G-specific adenine glycosylase 81472 82608 -1
CDS - ZP_04396597.1 VCF_002313 tRNA(m7G46)-methyltransferase 82758 83492 1
CDS - ZP_04396598.1 VCF_002314 glutaminase 83603 84523 1
CDS - ZP_04396599.1 VCF_002315 radical SAM family enzyme similar to coproporphyrinogen III oxidase oxygen-independent 84758 85933 -1
CDS - ZP_04396600.1 VCF_002316 nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) 85927 86529 -1
CDS - ZP_04396601.1 VCF_002317 hypothetical protein 86599 87030 -1
CDS - ZP_04396602.1 VCF_002318 hypothetical protein 87076 87366 -1
CDS - ZP_04396603.1 VCF_002319 hypothetical protein 87366 87923 -1
CDS - ZP_04396604.1 VCF_002320 pyrroline-5-carboxylate reductase 87977 88795 -1
CDS - ZP_04396605.1 VCF_002321 hypothetical protein 88848 89558 -1
CDS - ZP_04396606.1 VCF_002322 twitching motility protein PilT 89584 90621 1
CDS - ZP_04396607.1 VCF_002323 type IV pilus (Tfp) assembly protein ATPase component PilU 90636 91742 1
CDS - ZP_04396608.1 VCF_002324 transcriptional regulator LuxR family 91854 92657 1
CDS - ZP_04396609.1 VCF_002325 tyrosyl-tRNA synthetase 92742 94046 1
CDS - ZP_04396610.1 VCF_002326 hypothetical protein 94084 94506 -1
CDS - ZP_04396611.1 VCF_002327 hypothetical protein 94587 95189 -1
CDS - ZP_04396612.1 VCF_002328 glutathione synthetase 95186 96142 -1
CDS - ZP_04396613.1 VCF_002329 ribosomal RNA small subunit methyltransferase E 96156 96887 -1
CDS - ZP_04396614.1 VCF_002330 endonuclease I precursor 97025 97720 -1
CDS - ZP_04396615.1 VCF_002331 protein SprT 97848 98336 -1
CDS - ZP_04396616.1 VCF_002332 S-adenosylmethionine synthetase 98458 99615 -1
CDS - ZP_04396617.1 VCF_002333 transketolase 99980 101977 1
CDS - ZP_04396618.1 VCF_002334 hypothetical protein 101997 102092 1
CDS - ZP_04396619.1 VCF_002335 iron-regulated virulence regulatory protein IrgB 102049 102945 -1