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Vibrio cholerae TM 11079-80, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_04409571.1 VIF_000659 protoporphyrinogen IX oxidase oxygen-independent HemG 149 673 -1
CDS - ZP_04409572.1 VIF_000660 potassium uptake protein TrkH 696 2153 -1
CDS - ZP_04409573.1 VIF_000661 hypothetical protein 2173 2805 -1
CDS - ZP_04409574.1 VIF_000662 enoyl-CoA hydratase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase 3016 5187 1
CDS - ZP_04409575.1 VIF_000663 3-ketoacyl-CoA thiolase 5213 6376 1
CDS - ZP_04409576.1 VIF_000664 hypothetical protein 6443 7348 -1
CDS - ZP_04409577.1 VIF_000665 multidrug resistance protein 7507 8709 1
CDS - ZP_04409578.1 VIF_000666 N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate N-acetyltransferase 8769 10130 -1
CDS - ZP_04409579.1 VIF_000667 ATP synthase epsilon chain 10377 10799 -1
CDS - ZP_04409580.1 VIF_000668 ATP synthase beta chain 10818 12221 -1
CDS - ZP_04409581.1 VIF_000669 ATP synthase gamma chain 12256 13122 -1
CDS - ZP_04409582.1 VIF_000670 ATP synthase alpha chain 13167 14738 -1
CDS - ZP_04409583.1 VIF_000671 ATP synthase delta chain 14722 15255 -1
CDS - ZP_04409584.1 VIF_000672 ATP synthase B chain 15270 15740 -1
CDS - ZP_04409585.1 VIF_000673 ATP synthase C chain 15814 16071 -1
CDS - ZP_04409586.1 VIF_000674 ATP synthase A chain 16115 16927 -1
CDS - ZP_04409587.1 VIF_000675 ATP synthase protein I 16936 17325 -1
CDS - ZP_04409588.1 VIF_000676 chromosome (plasmid) partitioning protein ParB/stage 0 sporulation protein J 17515 18396 -1
CDS - ZP_04409589.1 VIF_000677 chromosome (plasmid) partitioning protein ParA/sporulation initiation inhibitor protein soj 18423 19196 -1
CDS - ZP_04409590.1 VIF_000678 ribosomal RNA small subunit methyltransferase G 19211 19843 -1
CDS - ZP_04409591.1 VIF_000679 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 19843 21738 -1
CDS - ZP_04409592.1 VIF_000680 flavoprotein MioC 22213 22647 -1
CDS - ZP_04409593.1 VIF_000681 hypothetical protein 22905 23795 1
CDS - ZP_04409594.1 VIF_000682 resolvase N-terminal domain 24921 25544 1
CDS - ZP_04409595.1 VIF_000683 DNA-damage-inducible protein J 25685 26191 1
CDS - ZP_04409596.1 VIF_000684 type I restriction-modification system DNA-methyltransferase subunit M 26257 28239 1
CDS - ZP_04409597.1 VIF_000685 restriction modification system DNA specificity domain 28236 29540 1
CDS - ZP_04409598.1 VIF_000686 type I restriction-modification system restriction subunit R 29540 32776 1
CDS - ZP_04409599.1 VIF_000687 hypothetical protein 32776 33330 1
CDS - ZP_04409600.1 VIF_000688 hypothetical protein 33330 34175 1
CDS - ZP_04409601.1 VIF_000689 virulence protein 34208 35242 1
CDS - ZP_04409602.1 VIF_000690 hypothetical protein 36808 38301 1
CDS - ZP_04409603.1 VIF_000691 integrase 38950 40119 -1
CDS - ZP_04409604.1 VIF_000692 GTPase and tRNA-U34 5-formylation enzyme TrmE 40283 41644 -1
CDS - ZP_04409605.1 VIF_000693 OxaI/YidC membrane insertion protein 41738 43186 -1
CDS - ZP_04409606.1 VIF_000694 ribonuclease P protein component 43591 43947 -1
CDS - ZP_04409607.1 VIF_000695 LSU ribosomal protein L34p 43960 44190 -1
CDS - ZP_04409608.1 VIF_000696 ABC-type polar amino acid transport system ATPase component 44339 45076 -1
CDS - ZP_04409609.1 VIF_000697 amino acid ABC transporter permease protein 45073 45744 -1
CDS - ZP_04409610.1 VIF_000698 amino acid ABC transporter amino acid-binding portion 45822 46568 -1
CDS - ZP_04409611.1 VIF_000699 chromosomal replication initiator protein dnaA 46880 48283 1
CDS - ZP_04409612.1 VIF_000700 DNA polymerase III beta subunit 48341 49441 1
CDS - ZP_04409613.1 VIF_000701 DNA recombination and repair protein RecF 49459 50550 1
CDS - ZP_04409614.1 VIF_000702 DNA gyrase subunit B 50571 52988 1
CDS - ZP_04409615.1 VIF_000703 hypothetical protein 53389 53829 1
CDS - ZP_04409616.1 VIF_000704 hypothetical protein 53839 53955 1
CDS - ZP_04409617.1 VIF_000705 heat shock protein A 54230 54667 1
CDS - ZP_04409618.1 VIF_000706 valine--pyruvate aminotransferase 54755 56011 -1
CDS - ZP_04409619.1 VIF_000707 glycyl-tRNA synthetase beta chain 56380 58461 -1
CDS - ZP_04409620.1 VIF_000708 glycyl-tRNA synthetase alpha chain 58476 59393 -1
CDS - ZP_04409621.1 VIF_000709 hypothetical protein 59809 60363 1
CDS - ZP_04409622.1 VIF_000710 NADH dehydrogenase subunit II-related protein 60469 60726 1
CDS - ZP_04409623.1 VIF_000711 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA 60813 61061 -1
CDS - ZP_04409624.1 VIF_000712 hypothetical protein 61194 61382 1
CDS - ZP_04409625.1 VIF_000713 alcohol dehydrogenase 61554 62534 -1
CDS - ZP_04409626.1 VIF_000714 threonine dehydratase biosynthetic 62782 64314 -1
CDS - ZP_04409627.1 VIF_000715 dihydroxy-acid dehydratase 64318 66159 -1
CDS - ZP_04409628.1 VIF_000716 branched-chain amino acid aminotransferase 66169 67128 -1
CDS - ZP_04409629.1 VIF_000717 acetolactate synthase small subunit 67119 67403 -1
CDS - ZP_04409630.1 VIF_000718 acetolactate synthase large subunit 67415 69061 -1
CDS - ZP_04409631.1 VIF_000719 Mg(2+) chelatase family protein/ComM-related protein 69596 71119 1
CDS - ZP_04409632.1 VIF_000720 1-acyl-sn-glycerol-3-phosphate acyltransferase 71209 72093 1
CDS - ZP_04409633.1 VIF_000721 periplasmic thiol:disulfide interchange protein DsbA 72170 72784 -1
CDS - ZP_04409634.1 VIF_000722 YihE protein required for LPS synthesis 72803 73825 -1
CDS - ZP_04409635.1 VIF_000723 type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu oxidation 73837 75324 -1
CDS - ZP_04409636.1 VIF_000724 protein YihD 75662 75940 -1
CDS - ZP_04409637.1 VIF_000725 hypothetical protein 76489 77280 1
CDS - ZP_04409638.1 VIF_000726 hypothetical protein 77364 78005 1
CDS - ZP_04409639.1 VIF_000727 hypothetical protein 78044 78694 -1
CDS - ZP_04409640.1 VIF_000728 potassium uptake protein TrkH 78607 80052 -1
CDS - ZP_04409641.1 VIF_000729 Trk system potassium uptake protein TrkA 80064 81470 -1
CDS - ZP_04409642.1 VIF_000730 ribosomal RNA small subunit methyltransferase B 81502 82782 -1
CDS - ZP_04409643.1 VIF_000731 methionyl-tRNA formyltransferase 82838 83785 -1
CDS - ZP_04409644.1 VIF_000732 peptide deformylase 83803 84387 -1
CDS - ZP_04409645.1 VIF_000733 LysM domain-containing protein 84452 85579 1
CDS - ZP_04409646.1 VIF_000734 hypothetical protein 85579 86538 1
CDS - ZP_04409647.1 VIF_000735 hypothetical protein 87485 87703 1
CDS - ZP_04409648.1 VIF_000736 hypothetical protein 88046 88384 1
CDS - ZP_04409649.1 VIF_000737 hypothetical protein 88386 89357 1
CDS - ZP_04409650.1 VIF_000738 hypothetical protein 89364 91121 1
CDS - ZP_04409651.1 VIF_000739 hypothetical protein 91162 92202 1
CDS - ZP_04409652.1 VIF_000740 hypothetical protein 92205 92666 1
CDS - ZP_04409653.1 VIF_000741 phage protein 92808 93074 1
CDS - ZP_04409654.1 VIF_000742 middle operon regulator-related protein 93480 93848 1
CDS - ZP_04409655.1 VIF_000743 hypothetical protein 94174 94752 1
CDS - ZP_04409656.1 VIF_000744 hypothetical protein 94807 95184 1
CDS - ZP_04409657.1 VIF_000745 hypothetical protein 95233 95592 1
CDS - ZP_04409658.1 VIF_000746 tape measure domain protein 95808 97418 1
CDS - ZP_04409659.1 VIF_000747 hypothetical protein 97595 97687 1
CDS - ZP_04409660.1 VIF_000748 hypothetical protein 97690 98166 1
CDS - ZP_04409661.1 VIF_000749 hypothetical protein 98174 98746 1
CDS - ZP_04409662.1 VIF_000750 hypothetical protein 98931 99416 -1
CDS - ZP_04409663.1 VIF_000751 transposase 99682 101214 -1
CDS - ZP_04409664.1 VIF_000752 phosphoribosylaminoimidazole carboxylase ATPase subunit 101382 102551 -1
CDS - ZP_04409665.1 VIF_000753 phosphoribosylaminoimidazole carboxylase catalytic subunit 102555 103040 -1
CDS - ZP_04409666.1 VIF_000754 Sua5 YciO YrdC YwlC family protein 103198 103764 1
CDS - ZP_04409667.1 VIF_000755 coproporphyrinogen III oxidase aerobic 103783 104700 1
CDS - ZP_04409668.1 VIF_000756 shikimate 5-dehydrogenase I alpha 104762 105598 1
CDS - ZP_04409669.1 VIF_000757 hypothetical protein 105595 105870 1
CDS - ZP_04409670.1 VIF_000758 carbonic anhydrase family 3 105851 106405 -1
CDS - ZP_04409671.1 VIF_000759 hypothetical protein 106591 106707 1
rRNA - - VIF_rna048 16S ribosomal RNA 106918 107548 1