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Vibrio cholerae TM 11079-80, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VIF_rna061 23S ribosomal RNA 1 561 -1
tRNA - - VIF_rna062 tRNA-Ala 850 925 -1
rRNA - - VIF_rna063 16S ribosomal RNA 988 2523 -1
CDS - ZP_04410389.1 VIF_001491 hypothetical protein 2709 2801 -1
CDS - ZP_04410390.1 VIF_001492 NAD(P)H-flavin reductase 3109 3819 -1
CDS - ZP_04410391.1 VIF_001493 ferredoxin 3835 4104 -1
CDS - ZP_04410392.1 VIF_001494 3-polyprenyl-4-hydroxybenzoate carboxy-lyase 4101 5990 -1
CDS - ZP_04410393.1 VIF_001495 hypothetical protein 6024 7016 -1
CDS - ZP_04410394.1 VIF_001496 IS1004 transposase 7137 7574 -1
CDS - ZP_04410395.1 VIF_001497 transcription termination factor Rho 7737 8996 -1
CDS - ZP_04410396.1 VIF_001498 thioredoxin 9194 9520 -1
CDS - ZP_04410397.1 VIF_001499 ATP-dependent RNA helicase RhlB 9632 10948 1
CDS - ZP_04410398.1 VIF_001500 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 10887 12449 1
CDS - ZP_04410399.1 VIF_001501 sensor histidine kinase 12572 16015 -1
CDS - ZP_04410400.1 VIF_001502 hypothetical protein 16108 17298 -1
CDS - ZP_04410401.1 VIF_001503 hypothetical protein 17558 19381 1
CDS - ZP_04410402.1 VIF_001504 DNA polymerase III epsilon subunit 19390 20019 1
CDS - ZP_04410403.1 VIF_001505 acetyl-coenzyme A synthetase 20171 22171 1
CDS - ZP_04410404.1 VIF_001506 3-dehydroquinate dehydratase II 22551 23003 1
CDS - ZP_04410405.1 VIF_001507 biotin carboxyl carrier protein of acetyl-CoA carboxylase 22931 23521 1
CDS - ZP_04410406.1 VIF_001508 biotin carboxylase of acetyl-CoA carboxylase 23536 24879 1
CDS - ZP_04410407.1 VIF_001509 hypothetical protein 24991 25107 1
CDS - ZP_04410408.1 VIF_001510 ribosomal protein L11 methyltransferase 25088 25975 1
CDS - ZP_04410409.1 VIF_001511 hypothetical protein 26015 26107 1
CDS - ZP_04410410.1 VIF_001512 tRNA dihydrouridine synthase B 26115 27083 1
CDS - ZP_04410411.1 VIF_001513 NA-binding protein Fis 27107 27403 1
CDS - ZP_04410412.1 VIF_001514 gluconate utilization system Gnt-I transcriptional repressor 27541 28539 1
CDS - ZP_04410413.1 VIF_001515 hypothetical protein 29015 29479 1
CDS - ZP_04410414.1 VIF_001516 hypothetical protein 29735 31516 1
CDS - ZP_04410415.1 VIF_001517 calcium/proton antiporter 31621 32724 -1
CDS - ZP_04410416.1 VIF_001518 phosphogluconate dehydratase 32877 34733 -1
CDS - ZP_04410417.1 VIF_001519 gluconokinase 34670 35185 -1
CDS - ZP_04410418.1 VIF_001520 low-affinity gluconate/H+ symporter GntU 35339 36715 1
CDS - ZP_04410419.1 VIF_001521 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase 36728 37333 1
CDS - ZP_04410420.1 VIF_001522 ferrichrome-iron receptor 37556 39598 1
CDS - ZP_04410421.1 VIF_001523 hypothetical protein 39619 40296 1
CDS - ZP_04410422.1 VIF_001524 hypothetical protein 40346 40471 1
CDS - ZP_04410423.1 VIF_001525 methyl-accepting chemotaxis protein 40531 42201 1
CDS - ZP_04410424.1 VIF_001526 lysine decarboxylase 42318 44519 -1
CDS - ZP_04410425.1 VIF_001527 lysine/cadaverine antiporter membrane protein CadB 44563 45900 -1
CDS - ZP_04410426.1 VIF_001528 transcriptional activator of cad operon 46602 48161 -1
CDS - ZP_04410427.1 VIF_001529 transcriptional regulator MerR family 48388 48789 -1
CDS - ZP_04410428.1 VIF_001530 IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase 49075 50667 1
CDS - ZP_04410429.1 VIF_001531 phosphoribosylamine--glycine ligase 50687 52015 1
CDS - ZP_04410430.1 VIF_001532 peptidyl-prolyl cis-trans isomerase 52114 52803 -1
CDS - ZP_04410431.1 VIF_001533 DNA-binding protein HU-alpha 52849 53121 -1
CDS - ZP_04410432.1 VIF_001534 hypothetical protein 53418 54551 1
CDS - ZP_04410433.1 VIF_001535 ROK family Glucokinase with ambiguous substrate specificity 54899 55831 -1
CDS - ZP_04410434.1 VIF_001536 mannose-6-phosphate isomerase 55845 57044 -1
CDS - ZP_04410435.1 VIF_001537 hypothetical protein 57407 58000 -1
CDS - ZP_04410436.1 VIF_001538 D-3-phosphoglycerate dehydrogenase 58068 58991 1
CDS - ZP_04410437.1 VIF_001539 uracil-DNA glycosylase 58991 59533 1
CDS - ZP_04410438.1 VIF_001540 hypothetical protein 59605 60843 1
CDS - ZP_04410439.1 VIF_001541 nucleotidyltransferase 61075 61407 -1
CDS - ZP_04410440.1 VIF_001542 nucleotidyltransferase 61385 61795 -1
CDS - ZP_04410441.1 VIF_001543 metallo-beta-lactamase family protein RNA-specific 61991 63358 -1
CDS - ZP_04410442.1 VIF_001544 hypothetical protein 63398 63520 -1
CDS - ZP_04410443.1 VIF_001545 lipid carrier : UDP-N-acetylgalactosaminyltransferase 63501 64055 -1
CDS - ZP_04410444.1 VIF_001546 UDP-glucose 4-epimerase 64063 65034 -1
CDS - ZP_04410445.1 VIF_001547 hypothetical protein 64986 65126 1
CDS - ZP_04410446.1 VIF_001548 nucleoside-diphosphate sugar epimerase/dehydratase 65187 67052 1
CDS - ZP_04410447.1 VIF_001549 glycosyltransferase 66940 68172 1
CDS - ZP_04410448.1 VIF_001550 RfbT protein 68207 69067 -1
CDS - ZP_04410449.1 VIF_001551 transposase 69464 70168 -1
CDS - ZP_04410450.1 VIF_001552 hypothetical protein 70175 70267 -1
CDS - ZP_04410451.1 VIF_001553 transposase 70204 70371 -1
CDS - ZP_04410452.1 VIF_001554 acyl protein synthase/acyl-CoA reductase RfbN 71395 73872 -1
CDS - ZP_04410453.1 VIF_001555 alcohol dehydrogenase 73863 74987 -1
CDS - ZP_04410454.1 VIF_001556 long-chain-fatty-acid--CoA ligase 74996 76411 -1
CDS - ZP_04410455.1 VIF_001557 acyl carrier protein 76417 76659 -1
CDS - ZP_04410456.1 VIF_001558 O-antigen export system ATP-binding protein 76698 77513 -1
CDS - ZP_04410457.1 VIF_001559 O-antigen export system permease protein 77452 78246 -1
CDS - ZP_04410458.1 VIF_001560 O-antigen export system polymerase or transferase 78218 79609 -1
CDS - ZP_04410459.1 VIF_001561 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 79606 80709 -1
CDS - ZP_04410460.1 VIF_001562 GDP-mannose 4,6-dehydratase 80720 81841 -1
CDS - ZP_04410461.1 VIF_001563 phosphomannomutase 81844 83235 -1
CDS - ZP_04410462.1 VIF_001564 mannose-1-phosphate guanylyltransferase (GDP) 83238 84635 -1
CDS - ZP_04410463.1 VIF_001565 ADP-L-glycero-D-manno-heptose-6-epimerase 85077 86021 1
CDS - ZP_04410464.1 VIF_001566 polysaccharide deacetylase 86180 87952 1
CDS - ZP_04410465.1 VIF_001567 transferase hexapeptide repeat family 87960 88526 1
CDS - ZP_04410466.1 VIF_001568 O-antigen ligase 88629 89834 -1
CDS - ZP_04410467.1 VIF_001569 beta-1,4-galactosyltransferase 89818 90546 -1
CDS - ZP_04410468.1 VIF_001570 hypothetical protein 90727 91788 1
CDS - ZP_04410469.1 VIF_001571 mannosyltransferase OCH1 and related enzymes 91795 92577 1
CDS - ZP_04410470.1 VIF_001572 3-deoxy-D-manno-octulosonic-acid transferase 92577 93857 1
CDS - ZP_04410471.1 VIF_001573 hypothetical protein 93854 94234 1
CDS - ZP_04410472.1 VIF_001574 capsular polysaccharide biosynthesis protein 94225 95808 1
CDS - ZP_04410473.1 VIF_001575 nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 95805 96548 1
CDS - ZP_04410474.1 VIF_001576 lipopolysaccharide synthesis protein WavE 96545 97489 1
CDS - ZP_04410475.1 VIF_001577 acetyltransferase 97529 98233 1
CDS - ZP_04410476.1 VIF_001578 hypothetical protein 98436 100430 -1
CDS - ZP_04410477.1 VIF_001579 3-deoxy-D-manno-octulosonic acid kinase 100441 101187 -1
CDS - ZP_04410478.1 VIF_001580 lipopolysaccharide heptosyltransferase I 101267 102340 1
CDS - ZP_04410479.1 VIF_001581 lipopolysaccharide biosynthesis glycosyltransferase 102383 103162 1
CDS - ZP_04410480.1 VIF_001582 ADP-heptose--lipooligosaccharide heptosyltransferase II 103224 104261 -1
CDS - ZP_04410481.1 VIF_001583 phosphopantetheine adenylyltransferase 104372 104866 1
CDS - ZP_04410482.1 VIF_001584 formamidopyrimidine-DNA glycosylase 104963 105772 -1
CDS - ZP_04410483.1 VIF_001585 hypothetical protein 105782 106270 -1
CDS - ZP_04410484.1 VIF_001586 LSU ribosomal protein L33p 106491 106658 -1
CDS - ZP_04410485.1 VIF_001587 DNA repair protein RadC 107202 107876 -1