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Vibrio mimicus VM223, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VMA_rna034 16S ribosomal RNA 1 397 -1
CDS - ZP_06031621.1 VMA_000322 ClpB protein 897 3368 -1
CDS - ZP_06031622.1 VMA_000323 hypothetical protein 3595 4317 -1
CDS - ZP_06031623.1 VMA_000324 ribosomal large subunit pseudouridine synthase D 4320 5294 -1
CDS - ZP_06031624.1 VMA_000325 probable component of the lipoprotein assembly complex (forms a complex with YaeT YfgL and NlpB) 5530 6174 1
CDS - ZP_06031625.1 VMA_000326 ribosome hibernation protein YfiA 6589 6915 1
CDS - ZP_06031626.1 VMA_000327 chorismate mutase I/prephenate dehydratase 7155 8330 1
CDS - ZP_06031627.1 VMA_000328 predicted polyamine sensor NspS involved in biofilm formation 8512 9552 1
CDS - ZP_06031628.1 VMA_000329 C-di-GMP phosphodiesterase MbaA repressor of biofilm formation 9536 11911 1
CDS - ZP_06031629.1 VMA_000330 hypothetical protein 12171 12383 1
CDS - ZP_06031630.1 VMA_000331 soluble lytic murein transglycosylase precursor 12823 14769 -1
CDS - ZP_06031631.1 VMA_000332 ABC transporter ATP-binding protein 15131 16798 1
CDS - ZP_06031632.1 VMA_000333 chorismate mutase I/cyclohexadienyl dehydrogenase 17452 18579 -1
CDS - ZP_06031633.1 VMA_000334 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha 18592 19665 -1
CDS - ZP_06031634.1 VMA_000335 autolysin sensor kinase 19830 21584 1
CDS - ZP_06031635.1 VMA_000336 response regulator of the LytR/AlgR family 21594 22307 1
CDS - ZP_06031636.1 VMA_000337 beta N-acetyl-glucosaminidase 22334 23326 -1
CDS - ZP_06031637.1 VMA_000338 anhydro-N-acetylmuramic acid kinase 23432 24544 1
CDS - ZP_06031638.1 VMA_000339 N-acetylmuramic acid 6-phosphate etherase 24562 25485 1
CDS - ZP_06031639.1 VMA_000340 NhaP-type Na(+)/H(+) and K(+)/H(+) antiporter 25509 27107 -1
CDS - ZP_06031640.1 VMA_000341 hypothetical protein 27064 27246 1
CDS - ZP_06031641.1 VMA_000342 carbon starvation protein A 27903 29387 1
CDS - ZP_06031642.1 VMA_000343 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 29513 30463 -1
CDS - ZP_06031643.1 VMA_000344 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA 30510 30839 -1
CDS - ZP_06031644.1 VMA_000345 lipoprotein signal peptidase 31113 31355 -1
CDS - ZP_06031645.1 VMA_000346 isoleucyl-tRNA synthetase 31644 34493 -1
CDS - ZP_06031646.1 VMA_000347 riboflavin kinase/FMN adenylyltransferase 34524 35492 -1
CDS - ZP_06031647.1 VMA_000348 hypothetical protein 35561 37123 -1
CDS - ZP_06031648.1 VMA_000349 SSU ribosomal protein S20p 37381 37641 1
CDS - ZP_06031649.1 VMA_000350 transcriptional activator HlyU 37740 37859 -1
CDS - ZP_06031650.1 VMA_000351 transcriptional activator NhaR 38259 39149 -1
CDS - ZP_06031651.1 VMA_000352 sodium-dependent phosphate transporter 39544 40692 1
CDS - ZP_06031652.1 VMA_000353 thymidylate synthase 40784 41635 -1
CDS - ZP_06031653.1 VMA_000354 prolipoprotein diacylglyceryl transferase 41645 42460 -1
CDS - ZP_06031654.1 VMA_000355 hypothetical protein 42489 43283 -1
CDS - ZP_06031655.1 VMA_000356 phosphocarrier protein kinase/phosphorylase nitrogen regulation associated 43293 45539 -1
CDS - ZP_06031656.1 VMA_000357 adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase 45542 46237 -1
CDS - ZP_06031657.1 VMA_000358 DNA mismatch repair endonuclease MutH 46750 47415 1
CDS - ZP_06031658.1 VMA_000359 oxidoreductase Tas aldo/keto reductase family 47704 48738 1
CDS - ZP_06031659.1 VMA_000360 transcriptional regulator VpsR 49571 50905 -1
CDS - ZP_06031660.1 VMA_000361 lysyl-tRNA synthetase (class II) 51178 52710 -1
CDS - ZP_06031661.1 VMA_000362 peptide chain release factor 2 52742 53533 -1
CDS - ZP_06031662.1 VMA_000363 branched-chain amino acid transport system carrier protein 54011 55279 -1
CDS - ZP_06031663.1 VMA_000364 predicted O-methyltransferase 55634 56353 1
CDS - ZP_06031664.1 VMA_000365 ATP-dependent RNA helicase SrmB 56444 57694 1
CDS - ZP_06031665.1 VMA_000366 peptide chain release factor 3 58523 60112 -1
CDS - ZP_06031666.1 VMA_000367 C-di-GMP phosphodiesterase A-related protein 60321 62378 1
CDS - ZP_06031667.1 VMA_000368 ribosomal-protein-S18p-alanine acetyltransferase 62367 62684 -1
CDS - ZP_06031668.1 VMA_000369 acetyltransferase 63332 63664 -1
CDS - ZP_06031669.1 VMA_000370 putative lipid carrier protein 63819 64238 -1
CDS - ZP_06031670.1 VMA_000371 hypothetical protein 64243 64374 -1
CDS - ZP_06031671.1 VMA_000372 hypothetical protein 64665 66719 1
CDS - ZP_06031672.1 VMA_000373 putative protease 66827 67840 1
CDS - ZP_06031673.1 VMA_000374 putative protease 67853 68731 1
CDS - ZP_06031674.1 VMA_000375 multidrug resistance efflux pump 68781 70118 -1
CDS - ZP_06031675.1 VMA_000376 transcriptional regulator MarR family 70162 70569 -1
CDS - ZP_06031676.1 VMA_000377 transposase Tn5 dimerization protein 70654 72039 -1
CDS - ZP_06031677.1 VMA_000378 lipoprotein NlpI 72174 73085 -1
CDS - ZP_06031678.1 VMA_000379 polyribonucleotide nucleotidyltransferase 73200 75329 -1
CDS - ZP_06031679.1 VMA_000380 SSU ribosomal protein S15p (S13e) 75643 75912 -1
CDS - ZP_06031680.1 VMA_000381 tRNA pseudouridine synthase B 76054 76992 -1
CDS - ZP_06031681.1 VMA_000382 ribosome-binding factor A 76992 77390 -1
CDS - ZP_06031682.1 VMA_000383 translation initiation factor 2 77492 80188 -1
CDS - ZP_06031683.1 VMA_000384 transcription termination protein NusA 80213 81700 -1
CDS - ZP_06031684.1 VMA_000385 UPF0090 domain-containing protein 81719 82174 -1
tRNA - - VMA_rna035 tRNA-Met 82385 82461 -1
tRNA - - VMA_rna036 tRNA-Leu 82517 82600 -1
CDS - ZP_06031685.1 VMA_000386 preprotein translocase subunit SecG 82626 82970 -1
CDS - ZP_06031686.1 VMA_000387 phosphoglucosamine mutase 83221 84561 -1
CDS - ZP_06031687.1 VMA_000388 dihydropteroate synthase 84587 85450 -1
CDS - ZP_06031688.1 VMA_000389 cell division protein FtsH 85491 87389 -1
CDS - ZP_06031689.1 VMA_000390 cell division protein FtsJ/ribosomal RNA large subunit methyltransferase J 87544 88173 -1
CDS - ZP_06031690.1 VMA_000391 RNA binding protein 88293 88589 1
CDS - ZP_06031691.1 VMA_000392 transcription elongation factor GreA 88654 89127 -1
CDS - ZP_06031692.1 VMA_000393 outer membrane protein OmpU 89691 90722 1
CDS - ZP_06031693.1 VMA_000394 D-alanyl-D-alanine carboxypeptidase 90820 92265 1
CDS - ZP_06031694.1 VMA_000395 tyrosyl-tRNA synthetase 92370 93557 -1
CDS - ZP_06031695.1 VMA_000396 membrane protein 93688 94983 1
CDS - ZP_06031696.1 VMA_000397 putative multidrug resistance protein 95065 98175 -1
CDS - ZP_06031697.1 VMA_000398 membrane-fusion protein 98186 99283 -1
CDS - ZP_06031698.1 VMA_000399 HesB family protein 99382 99723 -1
CDS - ZP_06031699.1 VMA_000400 glutamate-1-semialdehyde aminotransferase 100007 101305 1
CDS - ZP_06031700.1 VMA_000401 predicted permease 101543 102628 1
CDS - ZP_06031701.1 VMA_000402 16S RNA G1207 methylase RsmC 102702 103724 1
CDS - ZP_06031702.1 VMA_000403 chitin catabolic cascade sensor histidine kinase ChiS 103788 107321 1
CDS - ZP_06031703.1 VMA_000404 (GlcNAc)2 ABC transporter: substrate-binding protein 108003 109673 1
CDS - ZP_06031704.1 VMA_000405 peptide ABC transporter permease protein 109843 110829 1
CDS - ZP_06031705.1 VMA_000406 peptide ABC transporter permease protein 110988 111857 1
CDS - ZP_06031706.1 VMA_000407 (GlcNAc)2 ABC transporter ATP-binding component 1 111860 112843 1
CDS - ZP_06031707.1 VMA_000408 (GlcNAc)2 ABC transporter ATP-binding component 2 112886 113881 1
CDS - ZP_06031708.1 VMA_000409 glucosamine-link cellobiase 113942 115663 1
CDS - ZP_06031709.1 VMA_000410 glucosamine kinase GpsK 115663 116535 1
CDS - ZP_06031710.1 VMA_000411 beta-hexosaminidase 116545 118458 1
CDS - ZP_06031711.1 VMA_000412 chitobiose phosphorylase 118561 120966 1
CDS - ZP_06031712.1 VMA_000413 GlcNAc phosphomutase 121156 122568 1
CDS - ZP_06031713.1 VMA_000414 ferric iron ABC transporter ATP-binding protein 122687 123718 -1
CDS - ZP_06031714.1 VMA_000415 iron(III) ABC transporter permease protein 123718 125343 -1
CDS - ZP_06031715.1 VMA_000416 ferric iron ABC transporter iron-binding protein 125428 126441 -1
CDS - ZP_06031716.1 VMA_000417 ammonium transporter 126581 127732 -1
CDS - ZP_06031717.1 VMA_000418 nitrogen regulatory protein P-II 127834 128172 -1