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Vibrio orientalis CIP 102891, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - VIA_rna022 5S ribosomal RNA 98 218 1
tRNA - - VIA_rna023 tRNA-Asp 249 325 1
CDS - ZP_05942701.1 VIA_000145 hypothetical protein 615 1742 1
CDS - ZP_05942702.1 VIA_000146 GGDEF domain protein 1744 3168 1
CDS - ZP_05942703.1 VIA_000147 DedA protein 3315 3998 1
CDS - ZP_05942704.1 VIA_000148 hypothetical protein 4080 5390 -1
CDS - ZP_05942705.1 VIA_000149 5-methyltetrahydrofolate--homocysteine methyltransferase 5559 9239 1
CDS - ZP_05942706.1 VIA_000150 magnesium transporter 9309 10664 -1
CDS - ZP_05942707.1 VIA_000151 phosphocarrier protein nitrogen regulation associated 10777 11055 -1
CDS - ZP_05942708.1 VIA_000152 hypothetical protein 11059 11922 -1
CDS - ZP_05942709.1 VIA_000153 PTS system nitrogen-specific IIA component PtsN 11922 12290 -1
CDS - ZP_05942710.1 VIA_000154 ribosome hibernation protein YhbH 12373 12660 -1
CDS - ZP_05942711.1 VIA_000155 RNA polymerase sigma-54 factor RpoN 12685 14142 -1
CDS - ZP_05942712.1 VIA_000156 lipopolysaccharide ABC transporter ATP-binding protein LptB 14193 14918 -1
CDS - ZP_05942713.1 VIA_000157 LptA protein 14921 15418 -1
CDS - ZP_05942714.1 VIA_000158 YrbK protein 15399 15962 -1
CDS - ZP_05942715.1 VIA_000159 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 15959 16516 -1
CDS - ZP_05942716.1 VIA_000160 arabinose 5-phosphate isomerase 16516 17481 -1
CDS - ZP_05942717.1 VIA_000161 YrbG protein 17500 18465 -1
CDS - ZP_05942718.1 VIA_000162 uncharacterized ABC transporter ATP-binding protein YrbF 18710 19507 1
CDS - ZP_05942719.1 VIA_000163 uncharacterized ABC transporter permease component YrbE 19507 20295 1
CDS - ZP_05942720.1 VIA_000164 uncharacterized ABC transporter, periplasmic component YrbD 20316 20798 1
CDS - ZP_05942721.1 VIA_000165 uncharacterized ABC transporter auxiliary component YrbC 20810 21451 1
CDS - ZP_05942722.1 VIA_000166 hypothetical protein 21448 21777 1
CDS - ZP_05942723.1 VIA_000167 protein yrbA 21770 22024 1
CDS - ZP_05942724.1 VIA_000168 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 22034 23293 1
CDS - ZP_05942725.1 VIA_000169 1-acyl-sn-glycerol-3-phosphate acyltransferase 23410 24150 1
CDS - ZP_05942726.1 VIA_000170 uncharacterized flavoprotein 24226 24960 -1
CDS - ZP_05942727.1 VIA_000171 methyl-accepting chemotaxis protein 24938 25567 -1
tRNA - - VIA_rna024 tRNA-Asn 25721 25796 -1
tRNA - - VIA_rna025 tRNA-Thr 25832 25907 -1
tRNA - - VIA_rna026 tRNA-Asn 25918 25993 -1
tRNA - - VIA_rna027 tRNA-Thr 26015 26090 -1
tRNA - - VIA_rna028 tRNA-Phe 26145 26220 -1
CDS - ZP_05942728.1 VIA_000172 N-acetylglucosamine regulated methyl-accepting chemotaxis protein 26441 27895 -1
tRNA - - VIA_rna029 tRNA-Asn 28374 28449 -1
tRNA - - VIA_rna030 tRNA-Phe 28492 28567 -1
tRNA - - VIA_rna031 tRNA-Thr 28575 28650 -1
tRNA - - VIA_rna032 tRNA-Phe 28721 28796 -1
CDS - ZP_05942729.1 VIA_000173 membrane-bound lytic murein transglycosylase C precursor 28900 30036 -1
CDS - ZP_05942730.1 VIA_000174 hypothetical protein 30108 30380 -1
CDS - ZP_05942731.1 VIA_000175 A/G-specific adenine glycosylase 30398 31453 -1
CDS - ZP_05942732.1 VIA_000176 tRNA(m7G46)-methyltransferase 31651 32370 1
CDS - ZP_05942733.1 VIA_000177 glutaminase 32504 33424 1
CDS - ZP_05942734.1 VIA_000178 coproporphyrinogen III oxidase, oxygen-independent 33549 34724 -1
CDS - ZP_05942735.1 VIA_000179 nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) 34730 35329 -1
CDS - ZP_05942736.1 VIA_000180 hypothetical protein 35430 35861 -1
CDS - ZP_05942737.1 VIA_000181 hypothetical protein 35907 36197 -1
CDS - ZP_05942738.1 VIA_000182 membrane protein 36197 36754 -1
CDS - ZP_05942739.1 VIA_000183 pyrroline-5-carboxylate reductase 36793 37611 -1
CDS - ZP_05942740.1 VIA_000184 hypothetical protein 37635 38351 -1
CDS - ZP_05942741.1 VIA_000185 twitching motility protein PilT 38377 39414 1
CDS - ZP_05942742.1 VIA_000186 type IV pilus (Tfp) assembly protein ATPase component PilU 39432 40538 1
CDS - ZP_05942743.1 VIA_000187 putative Holliday junction resolvase 40782 41207 -1
CDS - ZP_05942744.1 VIA_000188 hypothetical protein 41229 41792 -1
CDS - ZP_05942745.1 VIA_000189 glutathione synthetase 41850 42803 -1
CDS - ZP_05942746.1 VIA_000190 ribosomal RNA small subunit methyltransferase E 42816 43592 -1
CDS - ZP_05942747.1 VIA_000191 endonuclease I precursor 43677 44378 -1
CDS - ZP_05942748.1 VIA_000192 protein SprT 44457 44954 -1
CDS - ZP_05942749.1 VIA_000193 putative cytochrome c oxidase subunit I 45024 45821 -1
CDS - ZP_05942750.1 VIA_000194 S-adenosylmethionine synthetase 46095 47249 -1
CDS - ZP_05942751.1 VIA_000195 transketolase 47570 49564 1
CDS - ZP_05942752.1 VIA_000196 hypothetical protein 49752 49988 -1
CDS - ZP_05942753.1 VIA_000197 D-erythrose-4-phosphate dehydrogenase 50189 51229 1
CDS - ZP_05942754.1 VIA_000198 phosphoglycerate kinase 51383 52543 1
CDS - ZP_05942755.1 VIA_000199 fructose-bisphosphate aldolase class II 52697 53773 1
CDS - ZP_05942756.1 VIA_000200 small-conductance mechanosensitive channel 54091 54957 1
CDS - ZP_05942757.1 VIA_000201 putative DNA-binding protein 55007 55489 -1
CDS - ZP_05942758.1 VIA_000202 lysine efflux permease 55497 56123 -1
CDS - ZP_05942759.1 VIA_000203 chromosome initiation inhibitor 56241 57137 1
CDS - ZP_05942760.1 VIA_000204 hypothetical protein 57137 57265 1
CDS - ZP_05942761.1 VIA_000205 hypothetical protein 57249 57944 1
CDS - ZP_05942762.1 VIA_000206 transcriptional regulator LuxZ 58010 58633 -1
CDS - ZP_05942763.1 VIA_000207 pyruvate kinase 58849 60261 -1
CDS - ZP_05942764.1 VIA_000208 transcriptional regulator of GlmS, DeoR family 60692 61453 1
CDS - ZP_05942765.1 VIA_000209 glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 61531 63363 1
CDS - ZP_05942766.1 VIA_000210 N-acetylglucosamine regulated methyl-accepting chemotaxis protein 63891 66695 1
CDS - ZP_05942767.1 VIA_000211 mannitol operon repressor 66794 67324 -1
CDS - ZP_05942768.1 VIA_000212 mannitol-1-phosphate 5-dehydrogenase 67381 68529 -1
CDS - ZP_05942769.1 VIA_000213 phosphotransferase system mannitol-specific 68644 70596 -1
CDS - ZP_05942770.1 VIA_000214 glucosamine-6-phosphate deaminase 71106 71906 -1
CDS - ZP_05942771.1 VIA_000215 TRAP transporter solute receptor 72122 73204 -1
CDS - ZP_05942772.1 VIA_000216 putative hemolysin 73460 75232 -1
CDS - ZP_05942773.1 VIA_000217 octaprenyl-diphosphate synthase/dimethylallyltransferase/geranyltranstransferase/ geranylgeranyl pyrophosphate synthetase 75669 76706 -1
CDS - ZP_05942774.1 VIA_000218 hypothetical protein 76731 76859 -1
CDS - ZP_05942775.1 VIA_000219 LSU ribosomal protein L21p 76909 77220 1
CDS - ZP_05942776.1 VIA_000220 LSU ribosomal protein L27p 77241 77498 1
CDS - ZP_05942777.1 VIA_000221 GTP-binding protein Obg 77800 78975 1
CDS - ZP_05942778.1 VIA_000222 hypothetical protein 79091 79858 1
CDS - ZP_05942779.1 VIA_000223 hypothetical protein 79855 80328 1
CDS - ZP_05942780.1 VIA_000224 dihydrofolate reductase 80350 80832 1
CDS - ZP_05942781.1 VIA_000225 bis(5'-nucleosyl)-tetraphosphatase symmetrical 80956 81780 -1
CDS - ZP_05942782.1 VIA_000226 ApaG protein 81790 82167 -1
CDS - ZP_05942783.1 VIA_000227 dimethyladenosine transferase 82237 83043 -1
CDS - ZP_05942784.1 VIA_000228 4-hydroxythreonine-4-phosphate dehydrogenase 83056 84048 -1
CDS - ZP_05942785.1 VIA_000229 peptidyl-prolyl cis-trans isomerase SurA 84038 85336 -1
CDS - ZP_05942786.1 VIA_000230 Imp required for envelope biogenesis/organic solvent tolerance protein precursor 85390 87777 -1
CDS - ZP_05942787.1 VIA_000231 DnaJ-like protein DjlA 87926 88777 1
tRNA - - VIA_rna033 tRNA-Met 88886 88961 -1
CDS - ZP_05942788.1 VIA_000232 RNA polymerase sigma factor RpoD 89108 90964 -1