Xanthomonadales
- Stenotrophomonas maltophilia K279a (complete)
- Stenotrophomonas maltophilia R551-3 (complete)
- Stenotrophomonas sp. SKA14 (incomplete)
- Xanthomonas albilineans (complete)
- Xanthomonas axonopodis pv. citri str. 306 (complete)
- Xanthomonas campestris pv. campestris str. 8004 (complete)
- Xanthomonas campestris pv. campestris str. ATCC 33913 (complete)
- Xanthomonas campestris pv. campestris str. B100 (complete)
- Xanthomonas campestris pv. musacearum NCPPB4381 (incomplete)
- Xanthomonas campestris pv. vasculorum NCPPB702 (incomplete)
- Xanthomonas campestris pv. vesicatoria str. 85-10 (complete)
- Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 (incomplete)
- Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 (incomplete)
- Xanthomonas oryzae pv. oryzae KACC10331 (complete)
- Xanthomonas oryzae pv. oryzae MAFF 311018 (complete)
- Xanthomonas oryzae pv. oryzae PXO99A (complete)
- Xanthomonas oryzae pv. oryzicola BLS256 (incomplete)
- Xylella fastidiosa 9a5c (complete)
- Xylella fastidiosa Dixon (incomplete)
- Xylella fastidiosa M12 (complete)
- Xylella fastidiosa M23 (complete)
- Xylella fastidiosa subsp. fastidiosa GB514 (complete)
- Xylella fastidiosa subsp. sandyi Ann-1 (incomplete)
- Xylella fastidiosa Temecula1 (complete)